miRNA display CGI


Results 81 - 100 of 662 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 74168 0.73 0.787006
Target:  5'- cGCCucucgGCGUGGGGCCCAUgccgcGCGGCgCCu -3'
miRNA:   3'- -CGG-----CGCGCUCUGGGUAaau--UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 83705 0.73 0.787006
Target:  5'- cGUCGCGCGuGuGgCUAUUUAACgAGCCCg -3'
miRNA:   3'- -CGGCGCGCuC-UgGGUAAAUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 99352 0.73 0.796395
Target:  5'- gGCCGgGCGGaucuuGGCCCcu---GCGACCCa -3'
miRNA:   3'- -CGGCgCGCU-----CUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 9635 0.73 0.796395
Target:  5'- cGCCGCGCc-GGCCCGccgcucgAGCAGCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaa----UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105841 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 93755 0.73 0.805627
Target:  5'- gGCCGCGCGGcuGCCgGc--GGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUc-UGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134905 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15050 0.73 0.787006
Target:  5'- aGCUGUGCGAG-CgCCAUcUGaccgGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUCuG-GGUAaAU----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132727 0.73 0.783208
Target:  5'- cGCCGCG-GGGGCCCcucgggggagGACGACUCu -3'
miRNA:   3'- -CGGCGCgCUCUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 66188 0.74 0.778428
Target:  5'- gGCCGCGCuGGACgCCuggcuggaggcGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcUCUG-GGuaaau------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 127004 0.75 0.697012
Target:  5'- aGCCcCGCGAGGCUCGU----CGGCCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUAaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 133550 0.75 0.697012
Target:  5'- cGCCGCGCGcuGGCCCG---AGCGGCgCg -3'
miRNA:   3'- -CGGCGCGCu-CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 83760 0.75 0.717676
Target:  5'- cGCCaCGUGGGACaCCGgcgaGGCAGCCCu -3'
miRNA:   3'- -CGGcGCGCUCUG-GGUaaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 120085 0.74 0.745061
Target:  5'- aGCCGCGCGGGgcgggagauaaagcGCCCGcgcgucGGCGACUCa -3'
miRNA:   3'- -CGGCGCGCUC--------------UGGGUaaa---UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 50074 0.74 0.74806
Target:  5'- cGCgGCGCG-GACCCGggc-GCGGCCa -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 102088 0.74 0.756009
Target:  5'- gGCCGCGCGcGACCCGgucaauaAACUCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauug-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 79272 0.74 0.756997
Target:  5'- gGCCGCGCGgcgaagcGGugCCGgugAACGGCgCCg -3'
miRNA:   3'- -CGGCGCGC-------UCugGGUaaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 29392 0.74 0.766816
Target:  5'- uGCCgcGCGCGAGGCCCuccUAACcugguuuGACCUg -3'
miRNA:   3'- -CGG--CGCGCUCUGGGuaaAUUG-------UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 49607 0.74 0.777467
Target:  5'- uGCCgcgcaguagGCGCGAGuCCCGa--AACGGCCCu -3'
miRNA:   3'- -CGG---------CGCGCUCuGGGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19012 0.73 0.808364
Target:  5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.