miRNA display CGI


Results 121 - 140 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 34945 0.72 0.848268
Target:  5'- aGCUGCGCGgcaucgcguggugGGACgCGUUuucccUGGCGGCCCc -3'
miRNA:   3'- -CGGCGCGC-------------UCUGgGUAA-----AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62381 0.72 0.848268
Target:  5'- cGCCGCGCc--GCCCGacgcgucUUUAGCGcACCCg -3'
miRNA:   3'- -CGGCGCGcucUGGGU-------AAAUUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 59426 0.73 0.81469
Target:  5'- cGCUGCGCcccGGGCCUGgcUGACGACCa -3'
miRNA:   3'- -CGGCGCGc--UCUGGGUaaAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 3506 0.73 0.81469
Target:  5'- aGCCGCGCGAGcUUCGUgu-ACGGgCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUAaauUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 68887 0.73 0.81469
Target:  5'- aGUCGcCGCGAGcaugcucgGCCCGgagaguGCAGCCCu -3'
miRNA:   3'- -CGGC-GCGCUC--------UGGGUaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 132727 0.73 0.783208
Target:  5'- cGCCGCG-GGGGCCCcucgggggagGACGACUCu -3'
miRNA:   3'- -CGGCGCgCUCUGGGuaaa------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 15050 0.73 0.787006
Target:  5'- aGCUGUGCGAG-CgCCAUcUGaccgGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUCuG-GGUAaAU----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 37228 0.73 0.787006
Target:  5'- gGCgGCGCGGacGACCCGgcgGACGGCgCg -3'
miRNA:   3'- -CGgCGCGCU--CUGGGUaaaUUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 131163 0.73 0.787006
Target:  5'- gGCCGCGCGcccGGGCCCcc--GGC-GCCCu -3'
miRNA:   3'- -CGGCGCGC---UCUGGGuaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 65442 0.73 0.787006
Target:  5'- aGCCGCGCGccgcGGACCgAgcgc-CGGCCCc -3'
miRNA:   3'- -CGGCGCGC----UCUGGgUaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 74168 0.73 0.787006
Target:  5'- cGCCucucgGCGUGGGGCCCAUgccgcGCGGCgCCu -3'
miRNA:   3'- -CGG-----CGCGCUCUGGGUAaau--UGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 83705 0.73 0.787006
Target:  5'- cGUCGCGCGuGuGgCUAUUUAACgAGCCCg -3'
miRNA:   3'- -CGGCGCGCuC-UgGGUAAAUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 80651 0.72 0.849089
Target:  5'- cGCuCGCGgGAGACCCGgcgccgGGgAGCCg -3'
miRNA:   3'- -CG-GCGCgCUCUGGGUaaa---UUgUUGGg -5'
6501 3' -51.1 NC_001847.1 + 99352 0.73 0.796395
Target:  5'- gGCCGgGCGGaucuuGGCCCcu---GCGACCCa -3'
miRNA:   3'- -CGGCgCGCU-----CUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 9635 0.73 0.796395
Target:  5'- cGCCGCGCc-GGCCCGccgcucgAGCAGCCg -3'
miRNA:   3'- -CGGCGCGcuCUGGGUaaa----UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 105841 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 93755 0.73 0.805627
Target:  5'- gGCCGCGCGGcuGCCgGc--GGCGGCCCg -3'
miRNA:   3'- -CGGCGCGCUc-UGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 134905 0.73 0.805627
Target:  5'- cGCCgggcgucgggGCGCGAGGCCCGggcucgGGCCCc -3'
miRNA:   3'- -CGG----------CGCGCUCUGGGUaaauugUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19012 0.73 0.808364
Target:  5'- gGCCGCGCGccccAGcGCCCGgccgaaaggccgagaAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGC----UC-UGGGUaaa------------UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 33891 0.73 0.813792
Target:  5'- cGCCGCGCGuGGCCgCGggcgUgcaggaccgccugUGGCAGCCUu -3'
miRNA:   3'- -CGGCGCGCuCUGG-GUa---A-------------AUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.