miRNA display CGI


Results 61 - 80 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 60967 0.66 0.989634
Target:  5'- cGCCGCGCGgcauGGGCCCcacgccgagaGGCgCCg -3'
miRNA:   3'- -CGGCGCGC----UCUGGGuaaauug---UUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 107451 0.66 0.988646
Target:  5'- cGCCGCGUGcgccGGCgCUAUaaaGGCAGCUCg -3'
miRNA:   3'- -CGGCGCGCu---CUG-GGUAaa-UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 5444 0.66 0.992414
Target:  5'- cCUGCGUGuuGCCCGacggcggUGGCGGCCg -3'
miRNA:   3'- cGGCGCGCucUGGGUaa-----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 113764 0.66 0.992414
Target:  5'- cGUCGC-UGAGAgCCGcccgaGGCGGCCCg -3'
miRNA:   3'- -CGGCGcGCUCUgGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 24101 0.66 0.992414
Target:  5'- aGCUgGCGCGGGuCCCAg--GGCucgcACUCg -3'
miRNA:   3'- -CGG-CGCGCUCuGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 45219 0.66 0.992199
Target:  5'- cGCCGcCGCGAGcgcgGCCUcgcgcggcACAACCUc -3'
miRNA:   3'- -CGGC-GCGCUC----UGGGuaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 98158 0.66 0.991289
Target:  5'- cGCCGCucgGCGcGGGCCCGcucgccGGC-GCCCg -3'
miRNA:   3'- -CGGCG---CGC-UCUGGGUaaa---UUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 62907 0.66 0.991289
Target:  5'- gGUgGCGCGggugcucgGGGCCCGcg-GGCGGCUCc -3'
miRNA:   3'- -CGgCGCGC--------UCUGGGUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13129 0.66 0.990553
Target:  5'- gGCCGCGaucAGcACCCcggucgcguuGCGACCCa -3'
miRNA:   3'- -CGGCGCgc-UC-UGGGuaaau-----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 98767 0.66 0.990036
Target:  5'- cGgCGCGCGcuGCCCGggccgcGGCGGCgCCg -3'
miRNA:   3'- -CgGCGCGCucUGGGUaaa---UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 71593 0.67 0.98542
Target:  5'- uGCCGCccgGCGccGGCCCA---GGCGGCgCCa -3'
miRNA:   3'- -CGGCG---CGCu-CUGGGUaaaUUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 116139 0.67 0.98542
Target:  5'- cGCUgggGCGCGcGGCCCGaggcgcUGGCGGCCg -3'
miRNA:   3'- -CGG---CGCGCuCUGGGUaa----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 97808 0.66 0.988646
Target:  5'- gGUCGCGCGcguGGCCgCGUcgGgcGCGugCCg -3'
miRNA:   3'- -CGGCGCGCu--CUGG-GUAaaU--UGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 75872 0.66 0.988646
Target:  5'- cGCCGC-CGGGGCUCGag-AGCcaaaucauGGCCCu -3'
miRNA:   3'- -CGGCGcGCUCUGGGUaaaUUG--------UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 39497 0.66 0.988646
Target:  5'- cGCCGCGCaGGcuCCCGgugAACAcCUCg -3'
miRNA:   3'- -CGGCGCGcUCu-GGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 116316 0.66 0.987111
Target:  5'- gGCgCGCGCGAgGACgCCGU------GCCCa -3'
miRNA:   3'- -CG-GCGCGCU-CUG-GGUAaauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 87282 0.66 0.987111
Target:  5'- cGCUGCGCGc-GCCCGcgcagcacGCGACCUc -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 38208 0.66 0.987111
Target:  5'- uGCCGCccGCgGAGGCCCGggccGCGcGCCUc -3'
miRNA:   3'- -CGGCG--CG-CUCUGGGUaaauUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 116827 0.66 0.986949
Target:  5'- aGCCGCGCGugugcucaaucccGGACCacgaaAGCAcaaaacggacGCCCu -3'
miRNA:   3'- -CGGCGCGC-------------UCUGGguaaaUUGU----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 44302 0.67 0.98542
Target:  5'- cGCgGCGCGGcGGgCCAgcgccagAGCGguGCCCg -3'
miRNA:   3'- -CGgCGCGCU-CUgGGUaaa----UUGU--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.