miRNA display CGI


Results 121 - 140 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 68874 0.66 0.991289
Target:  5'- cGCCGgGCcgaaGAGGCCUccc---CGGCCCa -3'
miRNA:   3'- -CGGCgCG----CUCUGGGuaaauuGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 19555 0.66 0.991289
Target:  5'- aGCCGCacGCGAucgacGCCCGcgaucgccGCGGCCCg -3'
miRNA:   3'- -CGGCG--CGCUc----UGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116278 0.67 0.979326
Target:  5'- cGCCGCucgGCGAGGCagCGUgccccGCuGACCCg -3'
miRNA:   3'- -CGGCG---CGCUCUGg-GUAaau--UG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 55144 0.67 0.979326
Target:  5'- cGCgCGCGCGuAGAgCCCccc-AGCGGCCa -3'
miRNA:   3'- -CG-GCGCGC-UCU-GGGuaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 59764 0.67 0.981537
Target:  5'- gGCCGCGUccGGugCCGUgcccauGCCCg -3'
miRNA:   3'- -CGGCGCGc-UCugGGUAaauuguUGGG- -5'
6501 3' -51.1 NC_001847.1 + 48643 0.66 0.989219
Target:  5'- cGCCGCGCGAcgGugCagcgccgcuGCAagaaGCCCg -3'
miRNA:   3'- -CGGCGCGCU--CugGguaaau---UGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 103265 0.66 0.988646
Target:  5'- uCCGCGCGAcgGGCuCCGccggcAGCAACgCCg -3'
miRNA:   3'- cGGCGCGCU--CUG-GGUaaa--UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 97808 0.66 0.988646
Target:  5'- gGUCGCGCGcguGGCCgCGUcgGgcGCGugCCg -3'
miRNA:   3'- -CGGCGCGCu--CUGG-GUAaaU--UGUugGG- -5'
6501 3' -51.1 NC_001847.1 + 104602 0.66 0.988646
Target:  5'- aGCCGCGCGAcGAgCUCGgc-GACGucgcGCUCg -3'
miRNA:   3'- -CGGCGCGCU-CU-GGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 39497 0.66 0.988646
Target:  5'- cGCCGCGCaGGcuCCCGgugAACAcCUCg -3'
miRNA:   3'- -CGGCGCGcUCu-GGGUaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 106678 0.66 0.987111
Target:  5'- cGCgGCGCGucGugCCAc--GGCGGCCa -3'
miRNA:   3'- -CGgCGCGCu-CugGGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 87282 0.66 0.987111
Target:  5'- cGCUGCGCGc-GCCCGcgcagcacGCGACCUc -3'
miRNA:   3'- -CGGCGCGCucUGGGUaaau----UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 27106 0.66 0.987111
Target:  5'- uGCCGCGCGcGcCCCGcc-GGCcGCCg -3'
miRNA:   3'- -CGGCGCGCuCuGGGUaaaUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 116827 0.66 0.986949
Target:  5'- aGCCGCGCGugugcucaaucccGGACCacgaaAGCAcaaaacggacGCCCu -3'
miRNA:   3'- -CGGCGCGC-------------UCUGGguaaaUUGU----------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 27338 0.67 0.98542
Target:  5'- cGCCGCGCuuuGCCgCGgccgccGCAGCCCc -3'
miRNA:   3'- -CGGCGCGcucUGG-GUaaau--UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 116139 0.67 0.98542
Target:  5'- cGCUgggGCGCGcGGCCCGaggcgcUGGCGGCCg -3'
miRNA:   3'- -CGG---CGCGCuCUGGGUaa----AUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 107370 0.67 0.983565
Target:  5'- cGCCGCGC-AGuuuauuguacGCCCcgc--ACAGCCCc -3'
miRNA:   3'- -CGGCGCGcUC----------UGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 79562 0.67 0.983565
Target:  5'- gGCuCGCGgGGGGCgCCGggcucGCGGCCUc -3'
miRNA:   3'- -CG-GCGCgCUCUG-GGUaaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 91633 0.67 0.981537
Target:  5'- cCCGCGCGcGccGCCCAg-UAGCGAUCg -3'
miRNA:   3'- cGGCGCGCuC--UGGGUaaAUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 38977 0.67 0.981537
Target:  5'- gGCCGCgGCGGGGCUUAguaGACGAUg- -3'
miRNA:   3'- -CGGCG-CGCUCUGGGUaaaUUGUUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.