miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 13686 1.16 0.003024
Target:  5'- aGCCGCGCGAGACCCAUUUAACAACCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGGUAAAUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 90775 0.85 0.253294
Target:  5'- cGCCuGCGCGgcgagGGGCCCGUUcAGCAGCCCc -3'
miRNA:   3'- -CGG-CGCGC-----UCUGGGUAAaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 13 0.84 0.293228
Target:  5'- cGCCGCGCG-GGCCCccu--GCGACCCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 102826 0.84 0.293228
Target:  5'- cGCCGCGCG-GGCCCccu--GCGACCCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 94245 0.82 0.353864
Target:  5'- uGCCGCGCGuG-CCCAUguuuGCGACCUa -3'
miRNA:   3'- -CGGCGCGCuCuGGGUAaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 89566 0.81 0.396029
Target:  5'- gGCCGCGUGAG-CaCCAUcuugAACAGCCCc -3'
miRNA:   3'- -CGGCGCGCUCuG-GGUAaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 120199 0.81 0.422835
Target:  5'- gGCCGCGCGAGcggcGCCCGcuc-GCAGCCUu -3'
miRNA:   3'- -CGGCGCGCUC----UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46767 0.8 0.450701
Target:  5'- cGCCGCGCGGGGCCgGUcc-GCcgcGCCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGgUAaauUGu--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 32829 0.8 0.469827
Target:  5'- -gCGCGCGAGGCCCGcgUGGCcGCCg -3'
miRNA:   3'- cgGCGCGCUCUGGGUaaAUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 91722 0.79 0.499268
Target:  5'- cGCgCGaCGCGAGGCCCAgcu-GCAgcGCCCu -3'
miRNA:   3'- -CG-GC-GCGCUCUGGGUaaauUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 62007 0.79 0.509264
Target:  5'- aGCgGCGCGGGGCCCu----GCGGCCg -3'
miRNA:   3'- -CGgCGCGCUCUGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 10066 0.79 0.519343
Target:  5'- gGCCGCGCG-GGCCCA----GCGcCCCg -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 32903 0.78 0.5295
Target:  5'- cGCCGCGCGcgagcgccuGGACgCCGUcccgccGACGACCCg -3'
miRNA:   3'- -CGGCGCGC---------UCUG-GGUAaa----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 97009 0.78 0.550024
Target:  5'- cGCCGCGCGaAGACUCGgugcccGGCGcACCCg -3'
miRNA:   3'- -CGGCGCGC-UCUGGGUaaa---UUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 86756 0.78 0.560378
Target:  5'- uGCCGC-CGAGGCCCGgcccGGCGGCgCCa -3'
miRNA:   3'- -CGGCGcGCUCUGGGUaaa-UUGUUG-GG- -5'
6501 3' -51.1 NC_001847.1 + 7898 0.78 0.560378
Target:  5'- aGCCGCGCGGGGCgCGc--GGCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCUGgGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 85087 0.78 0.570786
Target:  5'- cGCCGCGCGcGGACCC-----GCGGCCg -3'
miRNA:   3'- -CGGCGCGC-UCUGGGuaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 11755 0.77 0.578099
Target:  5'- aGCCGCaCGAGGCuuugugugagcgcuCCAUUUAuauGCAGCCCu -3'
miRNA:   3'- -CGGCGcGCUCUG--------------GGUAAAU---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29584 0.77 0.591733
Target:  5'- uGCCGUcuuGCGAGACCCGgccuuuGCGcCCCa -3'
miRNA:   3'- -CGGCG---CGCUCUGGGUaaau--UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 10383 0.77 0.591733
Target:  5'- cGCCGCucgcgGCGGGGCCgCuuuaUGACGGCCCg -3'
miRNA:   3'- -CGGCG-----CGCUCUGG-Guaa-AUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.