miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 13 0.84 0.293228
Target:  5'- cGCCGCGCG-GGCCCccu--GCGACCCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 293 0.67 0.98542
Target:  5'- cCCGCGCG-GGCgCCGUccccGCGcCCCg -3'
miRNA:   3'- cGGCGCGCuCUG-GGUAaau-UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 384 0.69 0.954144
Target:  5'- cGCCGCGCGccGGACCgCGcuc--CGACCg -3'
miRNA:   3'- -CGGCGCGC--UCUGG-GUaaauuGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 619 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 729 0.68 0.971518
Target:  5'- -aUGCGCGguGGugCCGUUUAcggcuACgAGCCCa -3'
miRNA:   3'- cgGCGCGC--UCugGGUAAAU-----UG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 1173 0.67 0.981537
Target:  5'- gGCCGCGCaGaAGGCCaccgccGCGGCCg -3'
miRNA:   3'- -CGGCGCG-C-UCUGGguaaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 1428 0.68 0.968498
Target:  5'- cGCgGUGCGcGGGCCCAggcgcgUGGCcACCg -3'
miRNA:   3'- -CGgCGCGC-UCUGGGUaa----AUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 1513 0.66 0.9885
Target:  5'- aGCCGCGCGuaggcGGCCuCGgcgcGCGcgaaggcGCCCg -3'
miRNA:   3'- -CGGCGCGCu----CUGG-GUaaauUGU-------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 1909 0.68 0.968498
Target:  5'- aGCgCGUGCGAGAgCCCGccgcggcgcGGCGGCCa -3'
miRNA:   3'- -CG-GCGCGCUCU-GGGUaaa------UUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 1945 0.69 0.945529
Target:  5'- cGCgGCGCaGAGcuccUCCAgcgagGGCAGCCCg -3'
miRNA:   3'- -CGgCGCG-CUCu---GGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 2088 0.71 0.887327
Target:  5'- cGCCcCGCGGGGCCCGcgcggcGGCGGgCCg -3'
miRNA:   3'- -CGGcGCGCUCUGGGUaaa---UUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 2331 0.69 0.945529
Target:  5'- cGCUGCGCGGaACCCGccguUUUGcACGGgCCg -3'
miRNA:   3'- -CGGCGCGCUcUGGGU----AAAU-UGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 2449 0.67 0.976925
Target:  5'- aGCCGCaGCGAGcuCCCGaucgAGCGggcggcggcGCCCc -3'
miRNA:   3'- -CGGCG-CGCUCu-GGGUaaa-UUGU---------UGGG- -5'
6501 3' -51.1 NC_001847.1 + 2552 0.67 0.981537
Target:  5'- cGCCGC-CG-GGCCgG---GGCGGCCCu -3'
miRNA:   3'- -CGGCGcGCuCUGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 2958 0.69 0.957701
Target:  5'- cGCCGUGUucgcacuGAGACCggCAUUUuauguucGCGGCCCc -3'
miRNA:   3'- -CGGCGCG-------CUCUGG--GUAAAu------UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3028 0.73 0.796395
Target:  5'- gGCCGCGcCGAGcaGCUCG----GCGGCCCg -3'
miRNA:   3'- -CGGCGC-GCUC--UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3386 0.68 0.964919
Target:  5'- aGCCGCGCaaaGCCCuccgcaagcagcgGgagAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcucUGGG-------------UaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3506 0.73 0.81469
Target:  5'- aGCCGCGCGAGcUUCGUgu-ACGGgCCg -3'
miRNA:   3'- -CGGCGCGCUCuGGGUAaauUGUUgGG- -5'
6501 3' -51.1 NC_001847.1 + 3750 0.66 0.988646
Target:  5'- gGCCGUGC-AGcgcuucguCgCCGUcgAGCAGCCCg -3'
miRNA:   3'- -CGGCGCGcUCu-------G-GGUAaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 3909 0.72 0.832278
Target:  5'- aGCCaGCGCGGGcGCCgGUUgcGC-GCCCg -3'
miRNA:   3'- -CGG-CGCGCUC-UGGgUAAauUGuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.