miRNA display CGI


Results 1 - 20 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 122155 0.76 0.655067
Target:  5'- cGCCGCGCGGGACgaggagagggaaCCAgc-GACcgGGCCCa -3'
miRNA:   3'- -CGGCGCGCUCUG------------GGUaaaUUG--UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 29584 0.77 0.591733
Target:  5'- uGCCGUcuuGCGAGACCCGgccuuuGCGcCCCa -3'
miRNA:   3'- -CGGCG---CGCUCUGGGUaaau--UGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 77734 0.77 0.602257
Target:  5'- cGCgCGUGCGAGGCCCGcccgGACcuACCCc -3'
miRNA:   3'- -CG-GCGCGCUCUGGGUaaa-UUGu-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 92145 0.77 0.612805
Target:  5'- cGCCGUccGCGGGGCCCGcc-GACAgcgaACCCg -3'
miRNA:   3'- -CGGCG--CGCUCUGGGUaaaUUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 132833 0.77 0.612805
Target:  5'- cCCGCGUgcuGGGGCCCAUgccgcccGGCGGCCCc -3'
miRNA:   3'- cGGCGCG---CUCUGGGUAaa-----UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 82466 0.76 0.633939
Target:  5'- gGCCGCGUGcggcGugCCGUggGACgAGCCCg -3'
miRNA:   3'- -CGGCGCGCu---CugGGUAaaUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 80769 0.76 0.655067
Target:  5'- cGCCgGCGCG-GACCgG---GACGACCCg -3'
miRNA:   3'- -CGG-CGCGCuCUGGgUaaaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 113374 0.76 0.655067
Target:  5'- gGCCgGCGCcGGGCCCGgcgccGGCGGCCCc -3'
miRNA:   3'- -CGG-CGCGcUCUGGGUaaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 89920 0.76 0.655067
Target:  5'- uGCCGCGCGAGGCCgCGcucgcGGCGGCgCu -3'
miRNA:   3'- -CGGCGCGCUCUGG-GUaaa--UUGUUGgG- -5'
6501 3' -51.1 NC_001847.1 + 10383 0.77 0.591733
Target:  5'- cGCCGCucgcgGCGGGGCCgCuuuaUGACGGCCCg -3'
miRNA:   3'- -CGGCG-----CGCUCUGG-Guaa-AUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 7898 0.78 0.560378
Target:  5'- aGCCGCGCGGGGCgCGc--GGCGGCCg -3'
miRNA:   3'- -CGGCGCGCUCUGgGUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 97009 0.78 0.550024
Target:  5'- cGCCGCGCGaAGACUCGgugcccGGCGcACCCg -3'
miRNA:   3'- -CGGCGCGC-UCUGGGUaaa---UUGU-UGGG- -5'
6501 3' -51.1 NC_001847.1 + 102826 0.84 0.293228
Target:  5'- cGCCGCGCG-GGCCCccu--GCGACCCc -3'
miRNA:   3'- -CGGCGCGCuCUGGGuaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 89566 0.81 0.396029
Target:  5'- gGCCGCGUGAG-CaCCAUcuugAACAGCCCc -3'
miRNA:   3'- -CGGCGCGCUCuG-GGUAaa--UUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 120199 0.81 0.422835
Target:  5'- gGCCGCGCGAGcggcGCCCGcuc-GCAGCCUu -3'
miRNA:   3'- -CGGCGCGCUC----UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 46767 0.8 0.450701
Target:  5'- cGCCGCGCGGGGCCgGUcc-GCcgcGCCCg -3'
miRNA:   3'- -CGGCGCGCUCUGGgUAaauUGu--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 32829 0.8 0.469827
Target:  5'- -gCGCGCGAGGCCCGcgUGGCcGCCg -3'
miRNA:   3'- cgGCGCGCUCUGGGUaaAUUGuUGGg -5'
6501 3' -51.1 NC_001847.1 + 91722 0.79 0.499268
Target:  5'- cGCgCGaCGCGAGGCCCAgcu-GCAgcGCCCu -3'
miRNA:   3'- -CG-GC-GCGCUCUGGGUaaauUGU--UGGG- -5'
6501 3' -51.1 NC_001847.1 + 10066 0.79 0.519343
Target:  5'- gGCCGCGCG-GGCCCA----GCGcCCCg -3'
miRNA:   3'- -CGGCGCGCuCUGGGUaaauUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 32903 0.78 0.5295
Target:  5'- cGCCGCGCGcgagcgccuGGACgCCGUcccgccGACGACCCg -3'
miRNA:   3'- -CGGCGCGC---------UCUG-GGUAaa----UUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.