miRNA display CGI


Results 21 - 40 of 662 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 3' -51.1 NC_001847.1 + 11441 0.66 0.992414
Target:  5'- uGCCGUGCGAccccgcgccagcGGCuaCCGUgcgcgUGGCgAGCCCc -3'
miRNA:   3'- -CGGCGCGCU------------CUG--GGUAa----AUUG-UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 64764 0.66 0.992414
Target:  5'- gGCCaGCGCGAGcucgcGCCCc---GGCGcCCCc -3'
miRNA:   3'- -CGG-CGCGCUC-----UGGGuaaaUUGUuGGG- -5'
6501 3' -51.1 NC_001847.1 + 122825 0.66 0.992414
Target:  5'- aGCCG-GCGGGcgcGCCCAccgGGCccgcGCCCu -3'
miRNA:   3'- -CGGCgCGCUC---UGGGUaaaUUGu---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 87121 0.66 0.992414
Target:  5'- gGCCaGCGCGcGGCUCGgg-GGCuACCUc -3'
miRNA:   3'- -CGG-CGCGCuCUGGGUaaaUUGuUGGG- -5'
6501 3' -51.1 NC_001847.1 + 128086 0.66 0.992414
Target:  5'- cGCCGCGU---GCCUuggUGGCGaaaGCCCa -3'
miRNA:   3'- -CGGCGCGcucUGGGuaaAUUGU---UGGG- -5'
6501 3' -51.1 NC_001847.1 + 103432 0.66 0.992414
Target:  5'- aGCgGCGCGcGGCCCGc---GCcuCCCc -3'
miRNA:   3'- -CGgCGCGCuCUGGGUaaauUGuuGGG- -5'
6501 3' -51.1 NC_001847.1 + 34600 0.66 0.992414
Target:  5'- cGCCGCgGCcGGcuccccgcccACCCAcuccGCGACCCg -3'
miRNA:   3'- -CGGCG-CGcUC----------UGGGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 16160 0.66 0.992414
Target:  5'- gGCCgGgGCGAccGCCCcgUUGGCcgcgGACCCc -3'
miRNA:   3'- -CGG-CgCGCUc-UGGGuaAAUUG----UUGGG- -5'
6501 3' -51.1 NC_001847.1 + 76492 0.66 0.992414
Target:  5'- cGCCugcaGCGCcuGGGAgCCCGUguucGCGGCCUa -3'
miRNA:   3'- -CGG----CGCG--CUCU-GGGUAaau-UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 63564 0.66 0.992199
Target:  5'- cGCCGgGCGGcacuguGACCCucguguuCGACCg -3'
miRNA:   3'- -CGGCgCGCU------CUGGGuaaauu-GUUGGg -5'
6501 3' -51.1 NC_001847.1 + 45219 0.66 0.992199
Target:  5'- cGCCGcCGCGAGcgcgGCCUcgcgcggcACAACCUc -3'
miRNA:   3'- -CGGC-GCGCUC----UGGGuaaau---UGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 81240 0.66 0.992199
Target:  5'- uCCGgGCGGGGCCgucgcgagGACGggggGCCCg -3'
miRNA:   3'- cGGCgCGCUCUGGguaaa---UUGU----UGGG- -5'
6501 3' -51.1 NC_001847.1 + 8397 0.66 0.991289
Target:  5'- uGCCGCGU-AGGCUacg--GGCAGCCg -3'
miRNA:   3'- -CGGCGCGcUCUGGguaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 116729 0.66 0.991289
Target:  5'- cCCGCGCGcg--CUGUUcGACAGCCCc -3'
miRNA:   3'- cGGCGCGCucugGGUAAaUUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 63065 0.66 0.991289
Target:  5'- aGCUGgGCGAGGCgCGggc-GCAGCUUc -3'
miRNA:   3'- -CGGCgCGCUCUGgGUaaauUGUUGGG- -5'
6501 3' -51.1 NC_001847.1 + 41444 0.66 0.991289
Target:  5'- aGUCGC-CGGGGCCCAUg----AACCg -3'
miRNA:   3'- -CGGCGcGCUCUGGGUAaauugUUGGg -5'
6501 3' -51.1 NC_001847.1 + 14311 0.66 0.991289
Target:  5'- gGCCGCcucuCGGGGCCuCAUcgAGCGGCg- -3'
miRNA:   3'- -CGGCGc---GCUCUGG-GUAaaUUGUUGgg -5'
6501 3' -51.1 NC_001847.1 + 64116 0.66 0.991289
Target:  5'- cGCgGCGCcAGACgCGUgc-GCGGCCg -3'
miRNA:   3'- -CGgCGCGcUCUGgGUAaauUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 29329 0.66 0.991289
Target:  5'- aGCCgcgaGCGCGAGugCgCG---GGCGGCCg -3'
miRNA:   3'- -CGG----CGCGCUCugG-GUaaaUUGUUGGg -5'
6501 3' -51.1 NC_001847.1 + 77078 0.66 0.991289
Target:  5'- gGCgCGCGCGc-GCgCCAaucGGCGGCCCg -3'
miRNA:   3'- -CG-GCGCGCucUG-GGUaaaUUGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.