miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 13720 1.08 0.000674
Target:  5'- gUCGGGCCGCUCAACGGCUCCGCCCUCc -3'
miRNA:   3'- -AGCCCGGCGAGUUGCCGAGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 13216 0.84 0.035021
Target:  5'- gUCGGGCCGCUCGGCGaGCUCCGCg--- -3'
miRNA:   3'- -AGCCCGGCGAGUUGC-CGAGGCGggag -5'
6501 5' -63.1 NC_001847.1 + 19940 0.8 0.076583
Target:  5'- cUCGGGCCGCgCGAgGGCUC-GCCCUUc -3'
miRNA:   3'- -AGCCCGGCGaGUUgCCGAGgCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 102896 0.79 0.087075
Target:  5'- cCGGGcCCGCUCug-GGCUCCGCCCc- -3'
miRNA:   3'- aGCCC-GGCGAGuugCCGAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 83 0.79 0.087075
Target:  5'- cCGGGcCCGCUCug-GGCUCCGCCCc- -3'
miRNA:   3'- aGCCC-GGCGAGuugCCGAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 58233 0.78 0.094014
Target:  5'- cCGGGCgGCagCGGCGGCgcgcgaCCGCCCUCc -3'
miRNA:   3'- aGCCCGgCGa-GUUGCCGa-----GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 95637 0.78 0.104082
Target:  5'- gCGGGCCGCUCuggcgcggggGGCGGCgcgggCCGCUCUg -3'
miRNA:   3'- aGCCCGGCGAG----------UUGCCGa----GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 95745 0.78 0.104082
Target:  5'- gCGGGCCGCUCuggcgcggggGGCGGCgcgggCCGCUCUg -3'
miRNA:   3'- aGCCCGGCGAG----------UUGCCGa----GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 95691 0.78 0.104082
Target:  5'- gCGGGCCGCUCuggcgcggggGGCGGCgcgggCCGCUCUg -3'
miRNA:   3'- aGCCCGGCGAG----------UUGCCGa----GGCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 94245 0.77 0.115159
Target:  5'- gCGGcGCCGUggAGCGGCUCgCGCCCUg -3'
miRNA:   3'- aGCC-CGGCGagUUGCCGAG-GCGGGAg -5'
6501 5' -63.1 NC_001847.1 + 31564 0.77 0.118095
Target:  5'- cCGGcGCCGC-CGGCGGCgggCCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGaGUUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 77111 0.77 0.118095
Target:  5'- cCGGGUCGCcagCAGCGGg-CCGCCCUUg -3'
miRNA:   3'- aGCCCGGCGa--GUUGCCgaGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 134377 0.77 0.118095
Target:  5'- cCGGcGCCGC-CGGCGGCgggCCGgCCUCg -3'
miRNA:   3'- aGCC-CGGCGaGUUGCCGa--GGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 92175 0.76 0.137225
Target:  5'- cCGGGCCgGC-CGGCGGC-CCGCCCc- -3'
miRNA:   3'- aGCCCGG-CGaGUUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 69112 0.76 0.145646
Target:  5'- gCGGGCCGCguucucggCGuacguggucuuuggcGCGGCgUCCGCCUUCg -3'
miRNA:   3'- aGCCCGGCGa-------GU---------------UGCCG-AGGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 19448 0.75 0.171282
Target:  5'- aCGGGCCGCagc-CGGCUCuCGCCCcCg -3'
miRNA:   3'- aGCCCGGCGaguuGCCGAG-GCGGGaG- -5'
6501 5' -63.1 NC_001847.1 + 10396 0.74 0.184219
Target:  5'- -gGGGCCGCUUuauGACGGC-CCGUCCc- -3'
miRNA:   3'- agCCCGGCGAG---UUGCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 81362 0.74 0.193316
Target:  5'- cUCGcGGCgGCU--GCGGUgcugCCGCCCUCg -3'
miRNA:   3'- -AGC-CCGgCGAguUGCCGa---GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 80477 0.74 0.196121
Target:  5'- gUCGGGCCGCgcuccccguuccgCAgcGCGGCgCUGCCgCUCg -3'
miRNA:   3'- -AGCCCGGCGa------------GU--UGCCGaGGCGG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 54960 0.74 0.198011
Target:  5'- aCGGGCCGCUCuuuGACGGCagCGCgCa- -3'
miRNA:   3'- aGCCCGGCGAG---UUGCCGagGCGgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.