miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 83 0.79 0.087075
Target:  5'- cCGGGcCCGCUCug-GGCUCCGCCCc- -3'
miRNA:   3'- aGCCC-GGCGAGuugCCGAGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 474 0.69 0.381292
Target:  5'- uUCGGcGCCG-UCAugGGUgcCCGCgCCUCc -3'
miRNA:   3'- -AGCC-CGGCgAGUugCCGa-GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 604 0.74 0.198011
Target:  5'- cCGcGGCCGCUCcgcAGCGGCgcgcggcCCGCgCCUCc -3'
miRNA:   3'- aGC-CCGGCGAG---UUGCCGa------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 768 0.72 0.244873
Target:  5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3'
miRNA:   3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5'
6501 5' -63.1 NC_001847.1 + 897 0.7 0.321213
Target:  5'- -gGGGCCGCcgCGGCcgccGGCcgCCGCCCg- -3'
miRNA:   3'- agCCCGGCGa-GUUG----CCGa-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 1100 0.69 0.373384
Target:  5'- cCGcGGCCGCg-GGCGGCgccgCCGCggCCUCc -3'
miRNA:   3'- aGC-CCGGCGagUUGCCGa---GGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 1209 0.71 0.287407
Target:  5'- gUCGGGCgccaGCUcCAGCGcGCgCCGCCCg- -3'
miRNA:   3'- -AGCCCGg---CGA-GUUGC-CGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 1944 0.73 0.212695
Target:  5'- cUCGGGCCGC-CGGC-GCUC-GUCCUCg -3'
miRNA:   3'- -AGCCCGGCGaGUUGcCGAGgCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2096 0.69 0.373384
Target:  5'- -gGGGcCCGCgCGGCGGCgggCCGCgaUCUCg -3'
miRNA:   3'- agCCC-GGCGaGUUGCCGa--GGCG--GGAG- -5'
6501 5' -63.1 NC_001847.1 + 2265 0.71 0.27469
Target:  5'- cCGGGCgGCacgCGGCGGaagCCGCCgUCg -3'
miRNA:   3'- aGCCCGgCGa--GUUGCCga-GGCGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 2330 0.67 0.521583
Target:  5'- gCGGGCgGgCagCGGCGGCUCcCGCCg-- -3'
miRNA:   3'- aGCCCGgC-Ga-GUUGCCGAG-GCGGgag -5'
6501 5' -63.1 NC_001847.1 + 2365 0.66 0.567648
Target:  5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3'
miRNA:   3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 2534 0.68 0.448417
Target:  5'- cCGGGCCGCgggaccgcugcUCucCGGCgggCUGUCUUCg -3'
miRNA:   3'- aGCCCGGCG-----------AGuuGCCGa--GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2621 0.67 0.512161
Target:  5'- cCGGaGgUGCuUCGGCGGgaCCGCCgUCg -3'
miRNA:   3'- aGCC-CgGCG-AGUUGCCgaGGCGGgAG- -5'
6501 5' -63.1 NC_001847.1 + 2664 0.66 0.539663
Target:  5'- uUCGcccGGCgGCUCGGCcggcaucGGCUCguccuccgCGCCCUCc -3'
miRNA:   3'- -AGC---CCGgCGAGUUG-------CCGAG--------GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2692 0.72 0.239242
Target:  5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3'
miRNA:   3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5'
6501 5' -63.1 NC_001847.1 + 2799 0.66 0.579339
Target:  5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3'
miRNA:   3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5'
6501 5' -63.1 NC_001847.1 + 2941 0.67 0.512161
Target:  5'- gCGcGGCCGcCUCcagcGCGGCggCCGCCUc- -3'
miRNA:   3'- aGC-CCGGC-GAGu---UGCCGa-GGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 3025 0.68 0.439667
Target:  5'- gCGGGCCGCgccgagcagcUCGGCGGCccggagCaCGCgCUCc -3'
miRNA:   3'- aGCCCGGCG----------AGUUGCCGa-----G-GCGgGAG- -5'
6501 5' -63.1 NC_001847.1 + 3166 0.66 0.56862
Target:  5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3'
miRNA:   3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.