Results 1 - 20 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 5' | -63.1 | NC_001847.1 | + | 83 | 0.79 | 0.087075 |
Target: 5'- cCGGGcCCGCUCug-GGCUCCGCCCc- -3' miRNA: 3'- aGCCC-GGCGAGuugCCGAGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 474 | 0.69 | 0.381292 |
Target: 5'- uUCGGcGCCG-UCAugGGUgcCCGCgCCUCc -3' miRNA: 3'- -AGCC-CGGCgAGUugCCGa-GGCG-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 604 | 0.74 | 0.198011 |
Target: 5'- cCGcGGCCGCUCcgcAGCGGCgcgcggcCCGCgCCUCc -3' miRNA: 3'- aGC-CCGGCGAG---UUGCCGa------GGCG-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 768 | 0.72 | 0.244873 |
Target: 5'- cCGGcccGCCGC-CGGCGGCgCCGgCCUCg -3' miRNA: 3'- aGCC---CGGCGaGUUGCCGaGGCgGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 897 | 0.7 | 0.321213 |
Target: 5'- -gGGGCCGCcgCGGCcgccGGCcgCCGCCCg- -3' miRNA: 3'- agCCCGGCGa-GUUG----CCGa-GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 1100 | 0.69 | 0.373384 |
Target: 5'- cCGcGGCCGCg-GGCGGCgccgCCGCggCCUCc -3' miRNA: 3'- aGC-CCGGCGagUUGCCGa---GGCG--GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 1209 | 0.71 | 0.287407 |
Target: 5'- gUCGGGCgccaGCUcCAGCGcGCgCCGCCCg- -3' miRNA: 3'- -AGCCCGg---CGA-GUUGC-CGaGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 1944 | 0.73 | 0.212695 |
Target: 5'- cUCGGGCCGC-CGGC-GCUC-GUCCUCg -3' miRNA: 3'- -AGCCCGGCGaGUUGcCGAGgCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2096 | 0.69 | 0.373384 |
Target: 5'- -gGGGcCCGCgCGGCGGCgggCCGCgaUCUCg -3' miRNA: 3'- agCCC-GGCGaGUUGCCGa--GGCG--GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2265 | 0.71 | 0.27469 |
Target: 5'- cCGGGCgGCacgCGGCGGaagCCGCCgUCg -3' miRNA: 3'- aGCCCGgCGa--GUUGCCga-GGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2330 | 0.67 | 0.521583 |
Target: 5'- gCGGGCgGgCagCGGCGGCUCcCGCCg-- -3' miRNA: 3'- aGCCCGgC-Ga-GUUGCCGAG-GCGGgag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2365 | 0.66 | 0.567648 |
Target: 5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3' miRNA: 3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2534 | 0.68 | 0.448417 |
Target: 5'- cCGGGCCGCgggaccgcugcUCucCGGCgggCUGUCUUCg -3' miRNA: 3'- aGCCCGGCG-----------AGuuGCCGa--GGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2621 | 0.67 | 0.512161 |
Target: 5'- cCGGaGgUGCuUCGGCGGgaCCGCCgUCg -3' miRNA: 3'- aGCC-CgGCG-AGUUGCCgaGGCGGgAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2664 | 0.66 | 0.539663 |
Target: 5'- uUCGcccGGCgGCUCGGCcggcaucGGCUCguccuccgCGCCCUCc -3' miRNA: 3'- -AGC---CCGgCGAGUUG-------CCGAG--------GCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2692 | 0.72 | 0.239242 |
Target: 5'- cCGGGuCCGC-CcGCGGCgccCCGgCCCUCa -3' miRNA: 3'- aGCCC-GGCGaGuUGCCGa--GGC-GGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2799 | 0.66 | 0.579339 |
Target: 5'- -aGGGCCGCgagcGCGGCcgccagCCGCgCCg- -3' miRNA: 3'- agCCCGGCGagu-UGCCGa-----GGCG-GGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2941 | 0.67 | 0.512161 |
Target: 5'- gCGcGGCCGcCUCcagcGCGGCggCCGCCUc- -3' miRNA: 3'- aGC-CCGGC-GAGu---UGCCGa-GGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 3025 | 0.68 | 0.439667 |
Target: 5'- gCGGGCCGCgccgagcagcUCGGCGGCccggagCaCGCgCUCc -3' miRNA: 3'- aGCCCGGCG----------AGUUGCCGa-----G-GCGgGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 3166 | 0.66 | 0.56862 |
Target: 5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3' miRNA: 3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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