Results 21 - 40 of 331 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6501 | 5' | -63.1 | NC_001847.1 | + | 30615 | 0.66 | 0.578363 |
Target: 5'- -gGGGCCGCcgCGcagcgccgcaaacGCGGCggCCGCCg-- -3' miRNA: 3'- agCCCGGCGa-GU-------------UGCCGa-GGCGGgag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 49950 | 0.66 | 0.576411 |
Target: 5'- cCGGGCUGCcCGGCgccgaguacgcgcaGGCcgugCaCGCCCUCc -3' miRNA: 3'- aGCCCGGCGaGUUG--------------CCGa---G-GCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 62120 | 0.66 | 0.569593 |
Target: 5'- cCGcGGCCGCUgCcGCGGCcugguUCCGCgCC-Cg -3' miRNA: 3'- aGC-CCGGCGA-GuUGCCG-----AGGCG-GGaG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 11572 | 0.66 | 0.569593 |
Target: 5'- cCGGccCCGCUCGcgGCGGCcCCGgCCCa- -3' miRNA: 3'- aGCCc-GGCGAGU--UGCCGaGGC-GGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 98404 | 0.66 | 0.569593 |
Target: 5'- uUCGGaggcaGCacuuGCUCGacGCGGCUCCGgCgCUCg -3' miRNA: 3'- -AGCC-----CGg---CGAGU--UGCCGAGGCgG-GAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 53008 | 0.66 | 0.569593 |
Target: 5'- gCGGaGCCGa-CAGCGGCggCCGCugcgcgcucgggCCUCg -3' miRNA: 3'- aGCC-CGGCgaGUUGCCGa-GGCG------------GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 130500 | 0.66 | 0.569593 |
Target: 5'- gUCGGGCgGU-----GGCUCCuGCCCUUc -3' miRNA: 3'- -AGCCCGgCGaguugCCGAGG-CGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 40179 | 0.66 | 0.569593 |
Target: 5'- -gGGGCUGCgcgCGGCGGaacggCCGCCg-- -3' miRNA: 3'- agCCCGGCGa--GUUGCCga---GGCGGgag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 21589 | 0.66 | 0.569593 |
Target: 5'- -gGGGCCGCgg---GGCcCCGCCCc- -3' miRNA: 3'- agCCCGGCGaguugCCGaGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 124402 | 0.66 | 0.569593 |
Target: 5'- -gGGGCCGCgg---GGCcCCGCCCc- -3' miRNA: 3'- agCCCGGCGaguugCCGaGGCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 78631 | 0.66 | 0.569593 |
Target: 5'- gCGGGCCGUgaagCGgaaguucccGCGGCUCuCGUCUc- -3' miRNA: 3'- aGCCCGGCGa---GU---------UGCCGAG-GCGGGag -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 105979 | 0.66 | 0.56862 |
Target: 5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3' miRNA: 3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 3166 | 0.66 | 0.56862 |
Target: 5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3' miRNA: 3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 86989 | 0.66 | 0.56862 |
Target: 5'- cCGGGCCggcgcgcgccgGCcCGGCGGUUaccugggCCGCgCCUCg -3' miRNA: 3'- aGCCCGG-----------CGaGUUGCCGA-------GGCG-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 105178 | 0.66 | 0.567648 |
Target: 5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3' miRNA: 3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 2365 | 0.66 | 0.567648 |
Target: 5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3' miRNA: 3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 42260 | 0.66 | 0.565705 |
Target: 5'- gUGGGCagcagcaccucgaGCUCGcGCGGCgccaCGUCCUCg -3' miRNA: 3'- aGCCCGg------------CGAGU-UGCCGag--GCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 116587 | 0.66 | 0.563764 |
Target: 5'- aCGGGCCGgUCAccgagccccgcuacuACGGCcuggCCGgcaCCCUg -3' miRNA: 3'- aGCCCGGCgAGU---------------UGCCGa---GGC---GGGAg -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 73949 | 0.66 | 0.559887 |
Target: 5'- cCGGaGaCCuCUCucACGGCgaccuagCCGCCCUCc -3' miRNA: 3'- aGCC-C-GGcGAGu-UGCCGa------GGCGGGAG- -5' |
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6501 | 5' | -63.1 | NC_001847.1 | + | 69629 | 0.66 | 0.559887 |
Target: 5'- cCGGGCgGCcgCAcuGCGcGCgCCGCCC-Ca -3' miRNA: 3'- aGCCCGgCGa-GU--UGC-CGaGGCGGGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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