miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6501 5' -63.1 NC_001847.1 + 30615 0.66 0.578363
Target:  5'- -gGGGCCGCcgCGcagcgccgcaaacGCGGCggCCGCCg-- -3'
miRNA:   3'- agCCCGGCGa-GU-------------UGCCGa-GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 49950 0.66 0.576411
Target:  5'- cCGGGCUGCcCGGCgccgaguacgcgcaGGCcgugCaCGCCCUCc -3'
miRNA:   3'- aGCCCGGCGaGUUG--------------CCGa---G-GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 62120 0.66 0.569593
Target:  5'- cCGcGGCCGCUgCcGCGGCcugguUCCGCgCC-Cg -3'
miRNA:   3'- aGC-CCGGCGA-GuUGCCG-----AGGCG-GGaG- -5'
6501 5' -63.1 NC_001847.1 + 11572 0.66 0.569593
Target:  5'- cCGGccCCGCUCGcgGCGGCcCCGgCCCa- -3'
miRNA:   3'- aGCCc-GGCGAGU--UGCCGaGGC-GGGag -5'
6501 5' -63.1 NC_001847.1 + 98404 0.66 0.569593
Target:  5'- uUCGGaggcaGCacuuGCUCGacGCGGCUCCGgCgCUCg -3'
miRNA:   3'- -AGCC-----CGg---CGAGU--UGCCGAGGCgG-GAG- -5'
6501 5' -63.1 NC_001847.1 + 53008 0.66 0.569593
Target:  5'- gCGGaGCCGa-CAGCGGCggCCGCugcgcgcucgggCCUCg -3'
miRNA:   3'- aGCC-CGGCgaGUUGCCGa-GGCG------------GGAG- -5'
6501 5' -63.1 NC_001847.1 + 130500 0.66 0.569593
Target:  5'- gUCGGGCgGU-----GGCUCCuGCCCUUc -3'
miRNA:   3'- -AGCCCGgCGaguugCCGAGG-CGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 40179 0.66 0.569593
Target:  5'- -gGGGCUGCgcgCGGCGGaacggCCGCCg-- -3'
miRNA:   3'- agCCCGGCGa--GUUGCCga---GGCGGgag -5'
6501 5' -63.1 NC_001847.1 + 21589 0.66 0.569593
Target:  5'- -gGGGCCGCgg---GGCcCCGCCCc- -3'
miRNA:   3'- agCCCGGCGaguugCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 124402 0.66 0.569593
Target:  5'- -gGGGCCGCgg---GGCcCCGCCCc- -3'
miRNA:   3'- agCCCGGCGaguugCCGaGGCGGGag -5'
6501 5' -63.1 NC_001847.1 + 78631 0.66 0.569593
Target:  5'- gCGGGCCGUgaagCGgaaguucccGCGGCUCuCGUCUc- -3'
miRNA:   3'- aGCCCGGCGa---GU---------UGCCGAG-GCGGGag -5'
6501 5' -63.1 NC_001847.1 + 105979 0.66 0.56862
Target:  5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3'
miRNA:   3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5'
6501 5' -63.1 NC_001847.1 + 3166 0.66 0.56862
Target:  5'- gCGGGCCGCcuccagcgccUCGcggcaggcgACGGCgcagcggUCCGCCagCUCg -3'
miRNA:   3'- aGCCCGGCG----------AGU---------UGCCG-------AGGCGG--GAG- -5'
6501 5' -63.1 NC_001847.1 + 86989 0.66 0.56862
Target:  5'- cCGGGCCggcgcgcgccgGCcCGGCGGUUaccugggCCGCgCCUCg -3'
miRNA:   3'- aGCCCGG-----------CGaGUUGCCGA-------GGCG-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 105178 0.66 0.567648
Target:  5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3'
miRNA:   3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 2365 0.66 0.567648
Target:  5'- --cGGCCGCgUCGGCGGCggcggcuuuucgCCGgCgCCUCg -3'
miRNA:   3'- agcCCGGCG-AGUUGCCGa-----------GGC-G-GGAG- -5'
6501 5' -63.1 NC_001847.1 + 42260 0.66 0.565705
Target:  5'- gUGGGCagcagcaccucgaGCUCGcGCGGCgccaCGUCCUCg -3'
miRNA:   3'- aGCCCGg------------CGAGU-UGCCGag--GCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 116587 0.66 0.563764
Target:  5'- aCGGGCCGgUCAccgagccccgcuacuACGGCcuggCCGgcaCCCUg -3'
miRNA:   3'- aGCCCGGCgAGU---------------UGCCGa---GGC---GGGAg -5'
6501 5' -63.1 NC_001847.1 + 73949 0.66 0.559887
Target:  5'- cCGGaGaCCuCUCucACGGCgaccuagCCGCCCUCc -3'
miRNA:   3'- aGCC-C-GGcGAGu-UGCCGa------GGCGGGAG- -5'
6501 5' -63.1 NC_001847.1 + 69629 0.66 0.559887
Target:  5'- cCGGGCgGCcgCAcuGCGcGCgCCGCCC-Ca -3'
miRNA:   3'- aGCCCGgCGa-GU--UGC-CGaGGCGGGaG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.