miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6503 3' -57.2 NC_001847.1 + 29205 0.67 0.753955
Target:  5'- cCGGGCuCCCGGugcucucGGCCGcgGCGGGcCGc -3'
miRNA:   3'- cGUCCG-GGGCU-------CCGGUuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 29548 0.67 0.754924
Target:  5'- cGC-GGCCCUgGAGGCCGccgGCGGGg-- -3'
miRNA:   3'- -CGuCCGGGG-CUCCGGUua-CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 29595 0.69 0.6645
Target:  5'- cGCcGGgCCgGGGGCCGGUGgAAGUgGa -3'
miRNA:   3'- -CGuCCgGGgCUCCGGUUACgUUCAgU- -5'
6503 3' -57.2 NC_001847.1 + 30126 0.67 0.764545
Target:  5'- gGCGGccuacugccGCCCCGAGGUCGcgGCGcGGcUCGc -3'
miRNA:   3'- -CGUC---------CGGGGCUCCGGUuaCGU-UC-AGU- -5'
6503 3' -57.2 NC_001847.1 + 30606 0.72 0.472992
Target:  5'- aGC-GGCCCCGGGGCCGccGCGcAG-CGc -3'
miRNA:   3'- -CGuCCGGGGCUCCGGUuaCGU-UCaGU- -5'
6503 3' -57.2 NC_001847.1 + 31929 0.66 0.801739
Target:  5'- cCGGGCCCCGGucucGGUCGGaGCGcGGUCc -3'
miRNA:   3'- cGUCCGGGGCU----CCGGUUaCGU-UCAGu -5'
6503 3' -57.2 NC_001847.1 + 31976 0.73 0.400496
Target:  5'- gGCGGGCCCCGGGGCgCGAaGCccggGAGg-- -3'
miRNA:   3'- -CGUCCGGGGCUCCG-GUUaCG----UUCagu -5'
6503 3' -57.2 NC_001847.1 + 32121 0.68 0.735359
Target:  5'- uCGGGCCcCCGGGcGCCGGggGCGGGggCGg -3'
miRNA:   3'- cGUCCGG-GGCUC-CGGUUa-CGUUCa-GU- -5'
6503 3' -57.2 NC_001847.1 + 32155 0.7 0.5923
Target:  5'- cGgGGGCCCCGGGGgCCAAgacGCAGa--- -3'
miRNA:   3'- -CgUCCGGGGCUCC-GGUUa--CGUUcagu -5'
6503 3' -57.2 NC_001847.1 + 32197 0.7 0.612896
Target:  5'- cCGGGgCCCGAGGCCcgcggGCGGGg-- -3'
miRNA:   3'- cGUCCgGGGCUCCGGuua--CGUUCagu -5'
6503 3' -57.2 NC_001847.1 + 34082 0.78 0.229544
Target:  5'- cGCGgcGGCCCCGGGGCCGGccucgGCGGGUg- -3'
miRNA:   3'- -CGU--CCGGGGCUCCGGUUa----CGUUCAgu -5'
6503 3' -57.2 NC_001847.1 + 36085 0.69 0.633549
Target:  5'- gGC-GGCCCCG-GGCCug-GCGGG-CAu -3'
miRNA:   3'- -CGuCCGGGGCuCCGGuuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 38945 0.68 0.69521
Target:  5'- cCGGGCCCgGGGGCC---GCGAG-CGc -3'
miRNA:   3'- cGUCCGGGgCUCCGGuuaCGUUCaGU- -5'
6503 3' -57.2 NC_001847.1 + 39191 0.66 0.828025
Target:  5'- uCAGGCCCUGGGaGCgg--GCGauGGUCAu -3'
miRNA:   3'- cGUCCGGGGCUC-CGguuaCGU--UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 41618 0.69 0.623219
Target:  5'- cCGGGCgCuCCGGGGCCGccggGCGAGUgGg -3'
miRNA:   3'- cGUCCG-G-GGCUCCGGUua--CGUUCAgU- -5'
6503 3' -57.2 NC_001847.1 + 41833 0.71 0.531441
Target:  5'- cGCGGGUCCCaGGGCUGggGCAcGUCc -3'
miRNA:   3'- -CGUCCGGGGcUCCGGUuaCGUuCAGu -5'
6503 3' -57.2 NC_001847.1 + 43003 0.7 0.612896
Target:  5'- gGCGGGCCCCGcggacGGCgGAauugggGCAcgaAGUCAu -3'
miRNA:   3'- -CGUCCGGGGCu----CCGgUUa-----CGU---UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 43597 0.72 0.492138
Target:  5'- aGCGuGGCgCUGGGGCCGGUGCugGcCAc -3'
miRNA:   3'- -CGU-CCGgGGCUCCGGUUACGuuCaGU- -5'
6503 3' -57.2 NC_001847.1 + 46818 0.67 0.745192
Target:  5'- aCAGGCCCgCGcGGCUAAaGCGcgcaaaAGUCGa -3'
miRNA:   3'- cGUCCGGG-GCuCCGGUUaCGU------UCAGU- -5'
6503 3' -57.2 NC_001847.1 + 46934 0.66 0.828025
Target:  5'- cCGGGCUCCG-GGCCGcGUGCGgcgaAGcCAa -3'
miRNA:   3'- cGUCCGGGGCuCCGGU-UACGU----UCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.