Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6504 | 3' | -54.8 | NC_001847.1 | + | 103237 | 0.68 | 0.835218 |
Target: 5'- gCGGCCgCGGCCGUGaUCU-GCGGcGGCa -3' miRNA: 3'- gGUCGG-GUCGGUACgAGAaCGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 2742 | 0.68 | 0.826596 |
Target: 5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3' miRNA: 3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 91000 | 0.68 | 0.826596 |
Target: 5'- uCCAGCgagacgagagCCAcGCCGUGCcg--GCGGAGCa -3' miRNA: 3'- -GGUCG----------GGU-CGGUACGagaaCGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 27662 | 0.68 | 0.826596 |
Target: 5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3' miRNA: 3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 130475 | 0.68 | 0.826596 |
Target: 5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3' miRNA: 3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 105171 | 0.68 | 0.817785 |
Target: 5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3' miRNA: 3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 31918 | 0.68 | 0.817785 |
Target: 5'- aCGGCCgCGGCCGcgGCUCcgcgGCGGGuaaGCg -3' miRNA: 3'- gGUCGG-GUCGGUa-CGAGaa--CGUCU---UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 109899 | 0.68 | 0.808795 |
Target: 5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3' miRNA: 3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 82862 | 0.68 | 0.799634 |
Target: 5'- --cGUCCGGCaCGUGCUCgcccgUGCGGGcGCg -3' miRNA: 3'- gguCGGGUCG-GUACGAGa----ACGUCU-UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 25772 | 0.68 | 0.798709 |
Target: 5'- gCAGCCCAGCUgcgcccauuccgcGUGCUCg-GCcucGAGCu -3' miRNA: 3'- gGUCGGGUCGG-------------UACGAGaaCGu--CUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104667 | 0.68 | 0.790312 |
Target: 5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3' miRNA: 3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 1854 | 0.68 | 0.790312 |
Target: 5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3' miRNA: 3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 85257 | 0.68 | 0.799634 |
Target: 5'- cCCAGCacgUAGCCGUGCagcagCUcGCAGAguGCg -3' miRNA: 3'- -GGUCGg--GUCGGUACGa----GAaCGUCU--UG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 7086 | 0.68 | 0.808795 |
Target: 5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3' miRNA: 3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 2358 | 0.68 | 0.817785 |
Target: 5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3' miRNA: 3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 105555 | 0.68 | 0.826596 |
Target: 5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3' miRNA: 3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 117235 | 0.69 | 0.755569 |
Target: 5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3' miRNA: 3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 28348 | 0.69 | 0.751607 |
Target: 5'- gCAGCgCGGCCGUcauccgcccGCUgcUGCAGAGCc -3' miRNA: 3'- gGUCGgGUCGGUA---------CGAgaACGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 95752 | 0.69 | 0.747628 |
Target: 5'- -gAGCCCGGCCGgcgccgGCUCcccgacggcgucGCGGAGCu -3' miRNA: 3'- ggUCGGGUCGGUa-----CGAGaa----------CGUCUUG- -5' |
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6504 | 3' | -54.8 | NC_001847.1 | + | 104164 | 0.69 | 0.741626 |
Target: 5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3' miRNA: 3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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