miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 112247 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 9434 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 67905 0.8 0.220402
Target:  5'- gCCGGCCCAGUgGUcGCUCUU-CAGGACg -3'
miRNA:   3'- -GGUCGGGUCGgUA-CGAGAAcGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 27904 0.79 0.268913
Target:  5'- gCCGGCCCGGCC--GCgCUUGCGGAGg -3'
miRNA:   3'- -GGUCGGGUCGGuaCGaGAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 78795 0.76 0.3996
Target:  5'- gCCGGCCCguGGCCAUGUcgcgCUUGUAGuAGCc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGa---GAACGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 64155 0.75 0.435721
Target:  5'- gCGGCCC-GCCAUGCaggccgCUUGCGcGGACg -3'
miRNA:   3'- gGUCGGGuCGGUACGa-----GAACGU-CUUG- -5'
6504 3' -54.8 NC_001847.1 + 78408 0.74 0.464014
Target:  5'- aCAGCUUGGCCA-GCUCgUUGCuGAGCa -3'
miRNA:   3'- gGUCGGGUCGGUaCGAG-AACGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 14381 0.74 0.473657
Target:  5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3'
miRNA:   3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 127941 0.74 0.473657
Target:  5'- aCGGCCCAGCCGcGCUCg---AGGACg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaacgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 100608 0.74 0.503165
Target:  5'- gCAGCCCGGCCAgGCUCggGCccuGGCg -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaaCGuc-UUG- -5'
6504 3' -54.8 NC_001847.1 + 96874 0.73 0.537534
Target:  5'- gCGGUCCGcgcuggggagggaccGCCGUGCUCgcGCGGGACu -3'
miRNA:   3'- gGUCGGGU---------------CGGUACGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 3236 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 106049 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 39490 0.73 0.55399
Target:  5'- aCCAGCCC-GCCGcgcagGCUCccGguGAACa -3'
miRNA:   3'- -GGUCGGGuCGGUa----CGAGaaCguCUUG- -5'
6504 3' -54.8 NC_001847.1 + 11566 0.72 0.56435
Target:  5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3'
miRNA:   3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5'
6504 3' -54.8 NC_001847.1 + 115775 0.72 0.574761
Target:  5'- gCCGGCUCGGCCAgagcGUUC--GCGGAGCc -3'
miRNA:   3'- -GGUCGGGUCGGUa---CGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 70038 0.72 0.585216
Target:  5'- gCCAGCCgAGCCGcgGCUCgcucGCAGcuuAGCa -3'
miRNA:   3'- -GGUCGGgUCGGUa-CGAGaa--CGUC---UUG- -5'
6504 3' -54.8 NC_001847.1 + 134086 0.72 0.606226
Target:  5'- aCAGCCCGgcGCCGccgcuUGCUCUggcgaGCAGAGg -3'
miRNA:   3'- gGUCGGGU--CGGU-----ACGAGAa----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 63068 0.72 0.606226
Target:  5'- gCCAGCaCCAGCCA--CUCgucgccauggUGCGGGACc -3'
miRNA:   3'- -GGUCG-GGUCGGUacGAGa---------ACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 4610 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.