miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 1351 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6504 3' -54.8 NC_001847.1 + 1854 0.68 0.790312
Target:  5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3'
miRNA:   3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 2358 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 2607 0.67 0.867668
Target:  5'- gCgAGCCCGccgcGCCggagGUGCUUcgGCGGGACc -3'
miRNA:   3'- -GgUCGGGU----CGG----UACGAGaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 2742 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 3236 0.73 0.543686
Target:  5'- gCC-GCCCGcGCCGUGCUCgccggcgGCAGGGg -3'
miRNA:   3'- -GGuCGGGU-CGGUACGAGaa-----CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 4015 0.67 0.851867
Target:  5'- cCgGGCCCGGCgCccGcCUCUcGCGGGGCc -3'
miRNA:   3'- -GgUCGGGUCG-GuaC-GAGAaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 4610 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 5119 0.66 0.896524
Target:  5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3'
miRNA:   3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 6624 0.7 0.711113
Target:  5'- -gGGCCCAGCCGcggUGC-CUuaUGCgaGGAACa -3'
miRNA:   3'- ggUCGGGUCGGU---ACGaGA--ACG--UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 7086 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6504 3' -54.8 NC_001847.1 + 9434 1.11 0.002063
Target:  5'- cCCAGCCCAGCCAUGCUCUUGCAGAACc -3'
miRNA:   3'- -GGUCGGGUCGGUACGAGAACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6504 3' -54.8 NC_001847.1 + 10135 0.7 0.721369
Target:  5'- gCgGGCCCGGCCGUaGCgCgaGCGGGAg -3'
miRNA:   3'- -GgUCGGGUCGGUA-CGaGaaCGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 10172 0.67 0.859876
Target:  5'- gCCGGCCCGcugcGCCG-GCUUUUGCGc--- -3'
miRNA:   3'- -GGUCGGGU----CGGUaCGAGAACGUcuug -5'
6504 3' -54.8 NC_001847.1 + 11566 0.72 0.56435
Target:  5'- cCCGGUCCGGCCccGCUCgcgGCGGc-- -3'
miRNA:   3'- -GGUCGGGUCGGuaCGAGaa-CGUCuug -5'
6504 3' -54.8 NC_001847.1 + 11641 0.66 0.903136
Target:  5'- gCAGCCCuGGCCccgGCcccgCUUGCGGcGGCc -3'
miRNA:   3'- gGUCGGG-UCGGua-CGa---GAACGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 14381 0.74 0.473657
Target:  5'- aCGGCCgCGGCCGUGgUggcCUUGCAGGAg -3'
miRNA:   3'- gGUCGG-GUCGGUACgA---GAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 16202 0.7 0.721369
Target:  5'- aCUGGCCCGcGCCAUGCggCgUUGCAGc-- -3'
miRNA:   3'- -GGUCGGGU-CGGUACGa-G-AACGUCuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.