miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 5119 0.66 0.896524
Target:  5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3'
miRNA:   3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 102045 0.66 0.896524
Target:  5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3'
miRNA:   3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5'
6504 3' -54.8 NC_001847.1 + 100399 0.66 0.896524
Target:  5'- gCCAGCUCGGCC--GCgUCgaagGCGGAGu -3'
miRNA:   3'- -GGUCGGGUCGGuaCG-AGaa--CGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5'
6504 3' -54.8 NC_001847.1 + 3054 0.66 0.895849
Target:  5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3'
miRNA:   3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 133487 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 72837 0.66 0.889667
Target:  5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3'
miRNA:   3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 84917 0.66 0.889667
Target:  5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3'
miRNA:   3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 80291 0.66 0.889667
Target:  5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3'
miRNA:   3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5'
6504 3' -54.8 NC_001847.1 + 30674 0.66 0.889667
Target:  5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3'
miRNA:   3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 101166 0.66 0.882569
Target:  5'- cCCAGCCCGGCCAgcgcGCcCggcGcCAGcGCg -3'
miRNA:   3'- -GGUCGGGUCGGUa---CGaGaa-C-GUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 120773 0.66 0.882569
Target:  5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3'
miRNA:   3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 111307 0.66 0.882569
Target:  5'- gCCGGCUCggGGCCGUGCgCgcGCuGGACc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGaGaaCGuCUUG- -5'
6504 3' -54.8 NC_001847.1 + 9641 0.66 0.882569
Target:  5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3'
miRNA:   3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5'
6504 3' -54.8 NC_001847.1 + 64744 0.67 0.878196
Target:  5'- uCCGGacacCCCGGCCGUacagucgcacccgggGCUCUU-CGGGGCg -3'
miRNA:   3'- -GGUC----GGGUCGGUA---------------CGAGAAcGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 116334 0.67 0.875234
Target:  5'- -aAGCUgaaGGCCGUGCUCUUccacGgGGAGCu -3'
miRNA:   3'- ggUCGGg--UCGGUACGAGAA----CgUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 56845 0.67 0.875234
Target:  5'- gCGGCCCAGCCGcccgagcaccGC-CUcGCAGAGg -3'
miRNA:   3'- gGUCGGGUCGGUa---------CGaGAaCGUCUUg -5'
6504 3' -54.8 NC_001847.1 + 118801 0.67 0.875234
Target:  5'- gCCAGCgCCuccaGGCCGUGCcggucgUCUagggcGCGGAGCc -3'
miRNA:   3'- -GGUCG-GG----UCGGUACG------AGAa----CGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 129348 0.67 0.875234
Target:  5'- --cGUUCGGCCAUGCUUUcaUGCAaauGAGCc -3'
miRNA:   3'- gguCGGGUCGGUACGAGA--ACGU---CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.