miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 3' -54.8 NC_001847.1 + 2742 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 91000 0.68 0.826596
Target:  5'- uCCAGCgagacgagagCCAcGCCGUGCcg--GCGGAGCa -3'
miRNA:   3'- -GGUCG----------GGU-CGGUACGagaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 27662 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 105555 0.68 0.826596
Target:  5'- aCCGGCCCccGGCCcgGCgcg-GCGGcGCc -3'
miRNA:   3'- -GGUCGGG--UCGGuaCGagaaCGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 130475 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6504 3' -54.8 NC_001847.1 + 105171 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 2358 0.68 0.817785
Target:  5'- gCCGGCCCGGCCGcgucgGCg---GCGGcGGCu -3'
miRNA:   3'- -GGUCGGGUCGGUa----CGagaaCGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 31918 0.68 0.817785
Target:  5'- aCGGCCgCGGCCGcgGCUCcgcgGCGGGuaaGCg -3'
miRNA:   3'- gGUCGG-GUCGGUa-CGAGaa--CGUCU---UG- -5'
6504 3' -54.8 NC_001847.1 + 82279 0.68 0.817785
Target:  5'- aCGcGCUCGGCCAcGC-CUUGCuGGAGCu -3'
miRNA:   3'- gGU-CGGGUCGGUaCGaGAACG-UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 7086 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6504 3' -54.8 NC_001847.1 + 109899 0.68 0.808795
Target:  5'- cCCAGCCCAcuaucCCGUGUgCUUGCAu-GCa -3'
miRNA:   3'- -GGUCGGGUc----GGUACGaGAACGUcuUG- -5'
6504 3' -54.8 NC_001847.1 + 82862 0.68 0.799634
Target:  5'- --cGUCCGGCaCGUGCUCgcccgUGCGGGcGCg -3'
miRNA:   3'- gguCGGGUCG-GUACGAGa----ACGUCU-UG- -5'
6504 3' -54.8 NC_001847.1 + 85257 0.68 0.799634
Target:  5'- cCCAGCacgUAGCCGUGCagcagCUcGCAGAguGCg -3'
miRNA:   3'- -GGUCGg--GUCGGUACGa----GAaCGUCU--UG- -5'
6504 3' -54.8 NC_001847.1 + 25772 0.68 0.798709
Target:  5'- gCAGCCCAGCUgcgcccauuccgcGUGCUCg-GCcucGAGCu -3'
miRNA:   3'- gGUCGGGUCGG-------------UACGAGaaCGu--CUUG- -5'
6504 3' -54.8 NC_001847.1 + 104667 0.68 0.790312
Target:  5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3'
miRNA:   3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 1854 0.68 0.790312
Target:  5'- cCCGGCCCAGgCGUGCgagucggcgCUcaGCAGcAGCc -3'
miRNA:   3'- -GGUCGGGUCgGUACGa--------GAa-CGUC-UUG- -5'
6504 3' -54.8 NC_001847.1 + 74673 0.69 0.780839
Target:  5'- gCCGGCCgAGCC--GCg---GCAGGACg -3'
miRNA:   3'- -GGUCGGgUCGGuaCGagaaCGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 131451 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5'
6504 3' -54.8 NC_001847.1 + 57003 0.69 0.771223
Target:  5'- gCC-GCCUGGCCAcguccuggUGC-CUgcUGCAGAACa -3'
miRNA:   3'- -GGuCGGGUCGGU--------ACGaGA--ACGUCUUG- -5'
6504 3' -54.8 NC_001847.1 + 28638 0.69 0.771223
Target:  5'- -gGGCCCgcGGCCGUGUUCgUGCcggagauggGGGACg -3'
miRNA:   3'- ggUCGGG--UCGGUACGAGaACG---------UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.