miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6504 5' -58.3 NC_001847.1 + 135123 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 79585 0.67 0.708857
Target:  5'- gCGGCCUCUUcGGGCgGggGCgCCGGGGg -3'
miRNA:   3'- -GCUGGGGGGuCUCGaCuuUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 107724 0.67 0.708857
Target:  5'- gGGCaCCCCGGGGCUacAACCCuuGGGc -3'
miRNA:   3'- gCUGgGGGGUCUCGAcuUUGGGu-CCU- -5'
6504 5' -58.3 NC_001847.1 + 72364 0.67 0.708857
Target:  5'- -cGCCCCCCcGGGCccAGACCCGGuGGu -3'
miRNA:   3'- gcUGGGGGGuCUCGacUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 32778 0.67 0.718743
Target:  5'- aGAUCCCUguGGGggGAGGgCCGGGGg -3'
miRNA:   3'- gCUGGGGGguCUCgaCUUUgGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 22582 0.67 0.728556
Target:  5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3'
miRNA:   3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 28336 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 3115 0.67 0.746968
Target:  5'- gCGGCCCgCCgcggccgAGAGCaccgGGAGCCCGGcGGc -3'
miRNA:   3'- -GCUGGGgGG-------UCUCGa---CUUUGGGUC-CU- -5'
6504 5' -58.3 NC_001847.1 + 749 0.67 0.747928
Target:  5'- gGGCCCCCCuAGGGC-GAGGCCg---- -3'
miRNA:   3'- gCUGGGGGG-UCUCGaCUUUGGguccu -5'
6504 5' -58.3 NC_001847.1 + 32310 0.67 0.756518
Target:  5'- --cCCCCCCGGGGUcgcagGggGCCCGcgcggcgcggcgcGGAg -3'
miRNA:   3'- gcuGGGGGGUCUCGa----CuuUGGGU-------------CCU- -5'
6504 5' -58.3 NC_001847.1 + 16453 0.67 0.757468
Target:  5'- -uACCCagCCGGGGCUGcgGCCCGGc- -3'
miRNA:   3'- gcUGGGg-GGUCUCGACuuUGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 131149 0.67 0.728556
Target:  5'- cCGGCgCCCCgCGGGGCcGcgcGCCCGGGc -3'
miRNA:   3'- -GCUG-GGGG-GUCUCGaCuu-UGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 125395 0.67 0.728556
Target:  5'- gGGCgCCCCGGGGCaGGGcccGCCCGGu- -3'
miRNA:   3'- gCUGgGGGGUCUCGaCUU---UGGGUCcu -5'
6504 5' -58.3 NC_001847.1 + 100743 0.67 0.718743
Target:  5'- cCGAgCUCUCGGGGCcGGggUCCAGGu -3'
miRNA:   3'- -GCUgGGGGGUCUCGaCUuuGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 85043 0.67 0.708857
Target:  5'- cCGG-CCCCCAGcAGCUGGccgAGCaUCAGGGg -3'
miRNA:   3'- -GCUgGGGGGUC-UCGACU---UUG-GGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 40803 0.66 0.776211
Target:  5'- gCGuCCUCCUcguauucgggggGGAGCUGcaccACCCGGGGg -3'
miRNA:   3'- -GCuGGGGGG------------UCUCGACuu--UGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 131016 0.66 0.776211
Target:  5'- gGGCCCgaggacgaUgGGGGC-GAGGCCCGGGAg -3'
miRNA:   3'- gCUGGGg-------GgUCUCGaCUUUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 133804 0.66 0.784485
Target:  5'- uGGCCgCgCAGGgcgcggcGCUGggGCUCGGGGa -3'
miRNA:   3'- gCUGGgGgGUCU-------CGACuuUGGGUCCU- -5'
6504 5' -58.3 NC_001847.1 + 93529 0.66 0.785397
Target:  5'- cCGGCggCCCCGGAGC----GCCCGGGu -3'
miRNA:   3'- -GCUGg-GGGGUCUCGacuuUGGGUCCu -5'
6504 5' -58.3 NC_001847.1 + 114081 0.66 0.776211
Target:  5'- gGGCCCcgcCCCAGGGCcucaGGGCCgGGGGu -3'
miRNA:   3'- gCUGGG---GGGUCUCGac--UUUGGgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.