miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 66189 0.67 0.490274
Target:  5'- cCGCCCCCucuuccgcaucggcGCCgCCCAgCgGcGGCUCGGGc -3'
miRNA:   3'- -GUGGGGG--------------UGG-GGGUgGgC-UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 121018 0.67 0.493012
Target:  5'- gGgCCCCGCCCaUCGCCCGuGa-CGAGg -3'
miRNA:   3'- gUgGGGGUGGG-GGUGGGCuCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 70684 0.67 0.493012
Target:  5'- gGCCCCC-CgCgCCGCCgCGGGCggcggCGGGg -3'
miRNA:   3'- gUGGGGGuGgG-GGUGG-GCUCGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 75798 0.67 0.493012
Target:  5'- cCGCCgCuCCGCCCCCGaugCCGGGCUgGu- -3'
miRNA:   3'- -GUGG-G-GGUGGGGGUg--GGCUCGAgCuc -5'
6505 3' -63.8 NC_001847.1 + 107630 0.67 0.493012
Target:  5'- -gUCCCCGCCgCCGCCgCGgcGGCggcCGAGg -3'
miRNA:   3'- guGGGGGUGGgGGUGG-GC--UCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 120811 0.67 0.50219
Target:  5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 9958 0.67 0.50219
Target:  5'- gCGCCUUCugCCCCGaggaCUGGGCccCGAGg -3'
miRNA:   3'- -GUGGGGGugGGGGUg---GGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 93328 0.67 0.474895
Target:  5'- gACCCgCGCCgCCCGCCCGcGCggugCGu- -3'
miRNA:   3'- gUGGGgGUGG-GGGUGGGCuCGa---GCuc -5'
6505 3' -63.8 NC_001847.1 + 37427 0.67 0.474895
Target:  5'- cCGCUUCUGCCCCCGCCgacgacggCGAGCgcagcagCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG--------GCUCGa------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 7506 0.67 0.474895
Target:  5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 640 0.67 0.456237
Target:  5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3'
miRNA:   3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5'
6505 3' -63.8 NC_001847.1 + 103632 0.67 0.457116
Target:  5'- -gUCCCCGCUCCCAUgCGGG-UCGAa -3'
miRNA:   3'- guGGGGGUGGGGGUGgGCUCgAGCUc -5'
6505 3' -63.8 NC_001847.1 + 9545 0.67 0.457116
Target:  5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 117138 0.67 0.457116
Target:  5'- -cCCCCCACgCCCAacagcCCCGAcGCUacgccaGAGg -3'
miRNA:   3'- guGGGGGUGgGGGU-----GGGCU-CGAg-----CUC- -5'
6505 3' -63.8 NC_001847.1 + 67170 0.67 0.463299
Target:  5'- gGCCCCCcgcucucggcggcgACCCCCugCCGcGGCUg--- -3'
miRNA:   3'- gUGGGGG--------------UGGGGGugGGC-UCGAgcuc -5'
6505 3' -63.8 NC_001847.1 + 34398 0.67 0.465962
Target:  5'- gACCUggACCCCgGCCCcgaGAGCUCGGc -3'
miRNA:   3'- gUGGGggUGGGGgUGGG---CUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 336 0.67 0.465962
Target:  5'- cCACgCCCGCgUCCCuCCCGGGCUucgcgcccCGGGg -3'
miRNA:   3'- -GUGgGGGUG-GGGGuGGGCUCGA--------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 32467 0.67 0.465962
Target:  5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3'
miRNA:   3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 96865 0.67 0.465962
Target:  5'- cCGCCaCCUGCCgCCGCCCGcGCgugCGGa -3'
miRNA:   3'- -GUGG-GGGUGGgGGUGGGCuCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 33025 0.68 0.448361
Target:  5'- uGCCgCCGCCCUCucCgCCGAGCUgGAc -3'
miRNA:   3'- gUGGgGGUGGGGGu-G-GGCUCGAgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.