miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 112472 0.68 0.414303
Target:  5'- uCGCCCCCAUCCCCccgaucccucGCCC--GCcCGGGg -3'
miRNA:   3'- -GUGGGGGUGGGGG----------UGGGcuCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 1421 0.68 0.422669
Target:  5'- gCGgCCCCGCgCCCCGCCaGGcacuauuugcGCUCGGGu -3'
miRNA:   3'- -GUgGGGGUG-GGGGUGGgCU----------CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 32573 0.68 0.431136
Target:  5'- gCGCCgCCCGCCgCUGCCCcaGAGCUgGGa -3'
miRNA:   3'- -GUGG-GGGUGGgGGUGGG--CUCGAgCUc -5'
6505 3' -63.8 NC_001847.1 + 88620 0.68 0.422669
Target:  5'- gCGCCgCCGCCgCCC-CCCGAGCg---- -3'
miRNA:   3'- -GUGGgGGUGG-GGGuGGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 103752 0.68 0.422669
Target:  5'- aGCCCgaGCCCgCGCCCGGGgaCGAc -3'
miRNA:   3'- gUGGGggUGGGgGUGGGCUCgaGCUc -5'
6505 3' -63.8 NC_001847.1 + 126454 0.68 0.431136
Target:  5'- gCGCCCCC-CUCCUcuaGCCCcccguguguGGGCUUGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGG---UGGG---------CUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 132818 0.68 0.431136
Target:  5'- aGCCgCCGCUgCCCGCCCGcguGCUgGGGc -3'
miRNA:   3'- gUGGgGGUGG-GGGUGGGCu--CGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 111837 0.68 0.439701
Target:  5'- uCACUCgggaCCCCACCCGAGCUCc-- -3'
miRNA:   3'- -GUGGGggugGGGGUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 123171 0.68 0.40604
Target:  5'- aGCCCCCGCCaaCGgCaCGcGCUCGAGu -3'
miRNA:   3'- gUGGGGGUGGggGUgG-GCuCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 96718 0.68 0.422669
Target:  5'- cCGCCCCUcggGCUCCCGCCCcuGCggCGAa -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGcuCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 63657 0.68 0.439701
Target:  5'- gCACCgCCGCCaCCgUugCCGGGCUCa-- -3'
miRNA:   3'- -GUGGgGGUGG-GG-GugGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 128284 0.68 0.439701
Target:  5'- aGgCCCUACCCgCGCgCGugcuGCUCGAGc -3'
miRNA:   3'- gUgGGGGUGGGgGUGgGCu---CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 6968 0.68 0.439701
Target:  5'- uGCCgCCGCCCCCugCCauAGCUUGc- -3'
miRNA:   3'- gUGGgGGUGGGGGugGGc-UCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 30005 0.68 0.431136
Target:  5'- aGCCgCCGCUgCCCGCCCGcguGCUgGGGc -3'
miRNA:   3'- gUGGgGGUGG-GGGUGGGCu--CGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 101473 0.68 0.431136
Target:  5'- gCGCCUCUAgCCCCGCgCGGGCcgCGGc -3'
miRNA:   3'- -GUGGGGGUgGGGGUGgGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 122154 0.68 0.431136
Target:  5'- -cCCCCCACCCCCAgCCGGuacuGCa---- -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCU----CGagcuc -5'
6505 3' -63.8 NC_001847.1 + 23641 0.68 0.431136
Target:  5'- gCGCCCCC-CUCCUcuaGCCCcccguguguGGGCUUGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGG---UGGG---------CUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 112730 0.68 0.397882
Target:  5'- gGgCCCCGCCCCCGCggaCGAGCa---- -3'
miRNA:   3'- gUgGGGGUGGGGGUGg--GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 107091 0.68 0.40604
Target:  5'- gGCCUugaggggcgCCGCCCCCGCCUcGGCUuCGAu -3'
miRNA:   3'- gUGGG---------GGUGGGGGUGGGcUCGA-GCUc -5'
6505 3' -63.8 NC_001847.1 + 33025 0.68 0.448361
Target:  5'- uGCCgCCGCCCUCucCgCCGAGCUgGAc -3'
miRNA:   3'- gUGGgGGUGGGGGu-G-GGCUCGAgCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.