miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 245 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103058 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 134881 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 32068 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 42177 0.72 0.235342
Target:  5'- aCGCCgCCCGCCC--GCCCGAGCcgugugcgaucgUCGAGg -3'
miRNA:   3'- -GUGG-GGGUGGGggUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9627 0.72 0.24084
Target:  5'- gCGCCCgCCGCCgcgCCgGCCCGccGCUCGAGc -3'
miRNA:   3'- -GUGGG-GGUGG---GGgUGGGCu-CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 68817 0.72 0.243069
Target:  5'- cCGCgCCCCACCCgCCGCagggcgccgcgaaGAGCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUGGG-GGUGgg-----------CUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 307 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 103120 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 16259 0.71 0.263908
Target:  5'- gGCCCCgGCCCCgUGCaCCGAGCgccCGGGu -3'
miRNA:   3'- gUGGGGgUGGGG-GUG-GGCUCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66295 0.71 0.2761
Target:  5'- aCGCCgCCGCgCUCgCGCCCGAGCUCu-- -3'
miRNA:   3'- -GUGGgGGUG-GGG-GUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 40237 0.71 0.282363
Target:  5'- cCACCCCCAgCCCCggcugGCCCGuGGCggugCGGu -3'
miRNA:   3'- -GUGGGGGUgGGGG-----UGGGC-UCGa---GCUc -5'
6505 3' -63.8 NC_001847.1 + 58754 0.71 0.282363
Target:  5'- gGCCCCCggcGCCCCC-CCCGAGgC-CGuGa -3'
miRNA:   3'- gUGGGGG---UGGGGGuGGGCUC-GaGCuC- -5'
6505 3' -63.8 NC_001847.1 + 78758 0.71 0.282363
Target:  5'- gGCCgaCCuCCCCgACCCGAGCgcCGAGg -3'
miRNA:   3'- gUGGg-GGuGGGGgUGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 95953 0.71 0.282363
Target:  5'- cCAUCgCCCGCUCCCaggGCCUGAGcCUCGAc -3'
miRNA:   3'- -GUGG-GGGUGGGGG---UGGGCUC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 116417 0.71 0.288737
Target:  5'- gGCCCCgGgCCgCgCGCuuGGGCUCGAGg -3'
miRNA:   3'- gUGGGGgUgGG-G-GUGggCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 75605 0.71 0.295225
Target:  5'- cCGCCCCCACCgCCUGCCaUGAGCgcagCGc- -3'
miRNA:   3'- -GUGGGGGUGG-GGGUGG-GCUCGa---GCuc -5'
6505 3' -63.8 NC_001847.1 + 63726 0.71 0.301825
Target:  5'- gCACCCUC-CCCCCGgCCGAGCa---- -3'
miRNA:   3'- -GUGGGGGuGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 58384 0.71 0.301825
Target:  5'- cCGCCUuuGcgugcCCCCCGCCCGAGCgccCGAc -3'
miRNA:   3'- -GUGGGggU-----GGGGGUGGGCUCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 101330 0.71 0.301825
Target:  5'- cCGCUCCCcUCCCCucuucUCUGGGCUCGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGGu----GGGCUCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.