miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 118087 0.7 0.315365
Target:  5'- gGCCgUUUACCgCCCGCCCGAGCugcgcguguacuUCGAGg -3'
miRNA:   3'- gUGG-GGGUGG-GGGUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 107438 0.7 0.315365
Target:  5'- aCGCCCUUGCCCCCGCCgCGuGCgcCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG-GCuCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 90914 0.7 0.321606
Target:  5'- aGCCCCaCGCCCgCACCCaaagucuGGGCUUGGc -3'
miRNA:   3'- gUGGGG-GUGGGgGUGGG-------CUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 98090 0.7 0.322305
Target:  5'- gCACCagCCGCCCCCAgCCCaGGCUaGAGu -3'
miRNA:   3'- -GUGGg-GGUGGGGGU-GGGcUCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 75649 0.7 0.322305
Target:  5'- gGCCUCggcgCACCCCCugCCG-GCUgGGGa -3'
miRNA:   3'- gUGGGG----GUGGGGGugGGCuCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 82565 0.7 0.329359
Target:  5'- gGCCUCgGCCgCCGCCuCGAGCUCcAGc -3'
miRNA:   3'- gUGGGGgUGGgGGUGG-GCUCGAGcUC- -5'
6505 3' -63.8 NC_001847.1 + 70028 0.7 0.329359
Target:  5'- gAgCCCCACCgCCAgCCGAGCcgCGGc -3'
miRNA:   3'- gUgGGGGUGGgGGUgGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 51197 0.7 0.329359
Target:  5'- cCGCCCCCGgCCCCGCgCGcacUUCGAGc -3'
miRNA:   3'- -GUGGGGGUgGGGGUGgGCuc-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 92562 0.7 0.329359
Target:  5'- cCACCCCCGUCCUCGucCCCGucGuCUCGAGg -3'
miRNA:   3'- -GUGGGGGUGGGGGU--GGGCu-C-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 115963 0.7 0.329359
Target:  5'- --aCCCCGCCCCCGCC-GuGCUgcgCGGGg -3'
miRNA:   3'- gugGGGGUGGGGGUGGgCuCGA---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 5818 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 23473 0.7 0.336526
Target:  5'- -gUUCCUAUggaagcaaCCCACCUGAGCUCGAGg -3'
miRNA:   3'- guGGGGGUGg-------GGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 135084 0.7 0.336526
Target:  5'- --aCCCCGCCCCCGCCCGccGCa---- -3'
miRNA:   3'- gugGGGGUGGGGGUGGGCu-CGagcuc -5'
6505 3' -63.8 NC_001847.1 + 108631 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 126286 0.7 0.336526
Target:  5'- -gUUCCUAUggaagcaaCCCACCUGAGCUCGAGg -3'
miRNA:   3'- guGGGGGUGg-------GGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 44391 0.7 0.336526
Target:  5'- gCGCUCCCGCUCCCgggGCCCGGccacGCgccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGG---UGGGCU----CGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 10433 0.7 0.336526
Target:  5'- gCGCUgCCGCCCCCgcGCCCG-GCUCc-- -3'
miRNA:   3'- -GUGGgGGUGGGGG--UGGGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 120066 0.7 0.336526
Target:  5'- cUAgCCCCGgCUCCugCCGAGCcgcgCGGGg -3'
miRNA:   3'- -GUgGGGGUgGGGGugGGCUCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 80645 0.7 0.343806
Target:  5'- -cCCCCCACCCCgGCCCcGGCg---- -3'
miRNA:   3'- guGGGGGUGGGGgUGGGcUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 109779 0.69 0.351199
Target:  5'- cCGCCgCCGCCCCCugCCaucAGCUUGc- -3'
miRNA:   3'- -GUGGgGGUGGGGGugGGc--UCGAGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.