miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 93085 0.69 0.351199
Target:  5'- gGCCCCCGCgCgCGCCCGcaaAGCggggCGGGc -3'
miRNA:   3'- gUGGGGGUGgGgGUGGGC---UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 119492 0.69 0.358703
Target:  5'- aGCCCgaGCCCgaGCCCGAGCcCGAGc -3'
miRNA:   3'- gUGGGggUGGGggUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 122664 0.69 0.358703
Target:  5'- cCGCCCCCGCCgCCACgCGGGaagccgCGGa -3'
miRNA:   3'- -GUGGGGGUGGgGGUGgGCUCga----GCUc -5'
6505 3' -63.8 NC_001847.1 + 41923 0.69 0.36632
Target:  5'- aACCCUCGCCCUCGCCCucGCcgUCGcAGu -3'
miRNA:   3'- gUGGGGGUGGGGGUGGGcuCG--AGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 33979 0.69 0.36632
Target:  5'- gCGCCCCgACCCCgGCCCcGGCccCGGc -3'
miRNA:   3'- -GUGGGGgUGGGGgUGGGcUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 76639 0.69 0.374047
Target:  5'- cCugCCCguCgCCCUGCCCGAGggCGGGg -3'
miRNA:   3'- -GugGGGguG-GGGGUGGGCUCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 31907 0.69 0.381883
Target:  5'- cCGCCgCCGCCgCCCGCCCGccccgggccccGGuCUCGGu -3'
miRNA:   3'- -GUGGgGGUGG-GGGUGGGC-----------UC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 5147 0.69 0.381883
Target:  5'- -cCCCCCACCCCCACCgCGcGUg---- -3'
miRNA:   3'- guGGGGGUGGGGGUGG-GCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 46886 0.69 0.381883
Target:  5'- -cCCCCCGUCCCCGCCCGGcGCcCGc- -3'
miRNA:   3'- guGGGGGUGGGGGUGGGCU-CGaGCuc -5'
6505 3' -63.8 NC_001847.1 + 107960 0.69 0.381883
Target:  5'- -cCCCCCACCCCCACCgCGcGUg---- -3'
miRNA:   3'- guGGGGGUGGGGGUGG-GCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 135104 0.69 0.381883
Target:  5'- cCGCCCCCccccaaaaACaCCCC-CCCGGGgUCGcAGg -3'
miRNA:   3'- -GUGGGGG--------UG-GGGGuGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 32291 0.69 0.381883
Target:  5'- cCGCCCCCccccaaaaACaCCCC-CCCGGGgUCGcAGg -3'
miRNA:   3'- -GUGGGGG--------UG-GGGGuGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 60008 0.69 0.389829
Target:  5'- gCACCgCCGgCCCCggcgggGCCCGGGCcuucUCGGGc -3'
miRNA:   3'- -GUGGgGGUgGGGG------UGGGCUCG----AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9917 0.68 0.397882
Target:  5'- gGgCCCCGCCCCCGCggaCGAGCa---- -3'
miRNA:   3'- gUgGGGGUGGGGGUGg--GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 40916 0.68 0.397882
Target:  5'- gGCCCgCGCgggcgCCCCGCCgCGAGCUCc-- -3'
miRNA:   3'- gUGGGgGUG-----GGGGUGG-GCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 112730 0.68 0.397882
Target:  5'- gGgCCCCGCCCCCGCggaCGAGCa---- -3'
miRNA:   3'- gUgGGGGUGGGGGUGg--GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 107091 0.68 0.40604
Target:  5'- gGCCUugaggggcgCCGCCCCCGCCUcGGCUuCGAu -3'
miRNA:   3'- gUGGG---------GGUGGGGGUGGGcUCGA-GCUc -5'
6505 3' -63.8 NC_001847.1 + 112629 0.68 0.40604
Target:  5'- gCACCCCCGCUgCCCugCCaGAGCg---- -3'
miRNA:   3'- -GUGGGGGUGG-GGGugGG-CUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 123171 0.68 0.40604
Target:  5'- aGCCCCCGCCaaCGgCaCGcGCUCGAGu -3'
miRNA:   3'- gUGGGGGUGGggGUgG-GCuCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 4278 0.68 0.40604
Target:  5'- gGCCUugaggggcgCCGCCCCCGCCUcGGCUuCGAu -3'
miRNA:   3'- gUGGG---------GGUGGGGGUGGGcUCGA-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.