miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 120811 0.67 0.50219
Target:  5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 114081 0.67 0.50219
Target:  5'- gGgCCCCGCCCCaggGCCUcaGGGC-CGGGg -3'
miRNA:   3'- gUgGGGGUGGGGg--UGGG--CUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 11268 0.67 0.50219
Target:  5'- gGgCCCCGCCCCaggGCCUcaGGGC-CGGGg -3'
miRNA:   3'- gUgGGGGUGGGGg--UGGG--CUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9958 0.67 0.50219
Target:  5'- gCGCCUUCugCCCCGaggaCUGGGCccCGAGg -3'
miRNA:   3'- -GUGGGGGugGGGGUg---GGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 83623 0.67 0.501269
Target:  5'- cCGCCCCCGCCUgccggcgCCGCaCCGGcgcggcgcuGCUcCGAGu -3'
miRNA:   3'- -GUGGGGGUGGG-------GGUG-GGCU---------CGA-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 121018 0.67 0.493012
Target:  5'- gGgCCCCGCCCaUCGCCCGuGa-CGAGg -3'
miRNA:   3'- gUgGGGGUGGG-GGUGGGCuCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 70684 0.67 0.493012
Target:  5'- gGCCCCC-CgCgCCGCCgCGGGCggcggCGGGg -3'
miRNA:   3'- gUGGGGGuGgG-GGUGG-GCUCGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 75798 0.67 0.493012
Target:  5'- cCGCCgCuCCGCCCCCGaugCCGGGCUgGu- -3'
miRNA:   3'- -GUGG-G-GGUGGGGGUg--GGCUCGAgCuc -5'
6505 3' -63.8 NC_001847.1 + 107630 0.67 0.493012
Target:  5'- -gUCCCCGCCgCCGCCgCGgcGGCggcCGAGg -3'
miRNA:   3'- guGGGGGUGGgGGUGG-GC--UCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 122836 0.67 0.493012
Target:  5'- gCGCCCaCCggGCCCgCGCCCuGGCUUGuGg -3'
miRNA:   3'- -GUGGG-GG--UGGGgGUGGGcUCGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 122193 0.67 0.493012
Target:  5'- cCACCCCCgGCCCgCCGCCCcaccGCaCGAc -3'
miRNA:   3'- -GUGGGGG-UGGG-GGUGGGcu--CGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 77481 0.67 0.493012
Target:  5'- gGCgCCCGgCCCgGCCCGccGGCcCGAGu -3'
miRNA:   3'- gUGgGGGUgGGGgUGGGC--UCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 66189 0.67 0.490274
Target:  5'- cCGCCCCCucuuccgcaucggcGCCgCCCAgCgGcGGCUCGGGc -3'
miRNA:   3'- -GUGGGGG--------------UGG-GGGUgGgC-UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 82052 0.67 0.483913
Target:  5'- gGCCgCCGCCCCgccgaaCGCugagCCGGGCUCGGc -3'
miRNA:   3'- gUGGgGGUGGGG------GUG----GGCUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 73894 0.67 0.483913
Target:  5'- gCGCCCCgCGCagcgauggCCCAgCCCGAagcGUUCGAGg -3'
miRNA:   3'- -GUGGGG-GUGg-------GGGU-GGGCU---CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 40087 0.67 0.483913
Target:  5'- gCACCCCUugCCgCGCCgGuGcCUCGGu -3'
miRNA:   3'- -GUGGGGGugGGgGUGGgCuC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 87597 0.67 0.483913
Target:  5'- gGCuCCCCGCgCCCG-CCGuGCUgGAGu -3'
miRNA:   3'- gUG-GGGGUGgGGGUgGGCuCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 46737 0.67 0.481199
Target:  5'- gGCCCCCugguacccgacggcGCgCCCGCCCGccGCgCGGGg -3'
miRNA:   3'- gUGGGGG--------------UGgGGGUGGGCu-CGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 15981 0.67 0.478492
Target:  5'- cCugCCCCGCCgCCCcgcggcggccgcggcGCCgaCGAGCUCGc- -3'
miRNA:   3'- -GugGGGGUGG-GGG---------------UGG--GCUCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 15922 0.67 0.478492
Target:  5'- cCugCCCCGCCgCCCcgcgguggccgcggcGCCgaCGAGCUCGc- -3'
miRNA:   3'- -GugGGGGUGG-GGG---------------UGG--GCUCGAGCuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.