Results 61 - 80 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6505 | 3' | -63.8 | NC_001847.1 | + | 4346 | 0.67 | 0.474895 |
Target: 5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3' miRNA: 3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 93328 | 0.67 | 0.474895 |
Target: 5'- gACCCgCGCCgCCCGCCCGcGCggugCGu- -3' miRNA: 3'- gUGGGgGUGG-GGGUGGGCuCGa---GCuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 110319 | 0.67 | 0.474895 |
Target: 5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3' miRNA: 3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 37427 | 0.67 | 0.474895 |
Target: 5'- cCGCUUCUGCCCCCGCCgacgacggCGAGCgcagcagCGGGc -3' miRNA: 3'- -GUGGGGGUGGGGGUGG--------GCUCGa------GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 7506 | 0.67 | 0.474895 |
Target: 5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3' miRNA: 3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 107159 | 0.67 | 0.474895 |
Target: 5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3' miRNA: 3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 119813 | 0.67 | 0.465962 |
Target: 5'- gCACCCCCcgcccGCCCCCgcuacGCCCGcGGCcccCGAc -3' miRNA: 3'- -GUGGGGG-----UGGGGG-----UGGGC-UCGa--GCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 103149 | 0.67 | 0.465962 |
Target: 5'- cCACgCCCGCgUCCCuCCCGGGCUucgcgcccCGGGg -3' miRNA: 3'- -GUGgGGGUG-GGGGuGGGCUCGA--------GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 96865 | 0.67 | 0.465962 |
Target: 5'- cCGCCaCCUGCCgCCGCCCGcGCgugCGGa -3' miRNA: 3'- -GUGG-GGGUGGgGGUGGGCuCGa--GCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 32467 | 0.67 | 0.465962 |
Target: 5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3' miRNA: 3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 336 | 0.67 | 0.465962 |
Target: 5'- cCACgCCCGCgUCCCuCCCGGGCUucgcgcccCGGGg -3' miRNA: 3'- -GUGgGGGUG-GGGGuGGGCUCGA--------GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 34398 | 0.67 | 0.465962 |
Target: 5'- gACCUggACCCCgGCCCcgaGAGCUCGGc -3' miRNA: 3'- gUGGGggUGGGGgUGGG---CUCGAGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 67170 | 0.67 | 0.463299 |
Target: 5'- gGCCCCCcgcucucggcggcgACCCCCugCCGcGGCUg--- -3' miRNA: 3'- gUGGGGG--------------UGGGGGugGGC-UCGAgcuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 9545 | 0.67 | 0.457116 |
Target: 5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3' miRNA: 3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 117138 | 0.67 | 0.457116 |
Target: 5'- -cCCCCCACgCCCAacagcCCCGAcGCUacgccaGAGg -3' miRNA: 3'- guGGGGGUGgGGGU-----GGGCU-CGAg-----CUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 112358 | 0.67 | 0.457116 |
Target: 5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3' miRNA: 3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 103632 | 0.67 | 0.457116 |
Target: 5'- -gUCCCCGCUCCCAUgCGGG-UCGAa -3' miRNA: 3'- guGGGGGUGGGGGUGgGCUCgAGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 640 | 0.67 | 0.456237 |
Target: 5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3' miRNA: 3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 103453 | 0.67 | 0.456237 |
Target: 5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3' miRNA: 3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 33025 | 0.68 | 0.448361 |
Target: 5'- uGCCgCCGCCCUCucCgCCGAGCUgGAc -3' miRNA: 3'- gUGGgGGUGGGGGu-G-GGCUCGAgCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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