miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 23641 0.68 0.431136
Target:  5'- gCGCCCCC-CUCCUcuaGCCCcccguguguGGGCUUGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGG---UGGG---------CUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 23722 0.79 0.076109
Target:  5'- -cCCCCCGCCCCCGgCCGAGCgccgccccuggCGGGg -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCUCGa----------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 23848 0.73 0.204536
Target:  5'- gGgCCCCGCCCCCGgCCGAGCg---- -3'
miRNA:   3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 24457 0.66 0.539597
Target:  5'- cCGCCCUCACCCUCGCgCaCGcAGCgCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUG-G-GC-UCGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 24733 0.66 0.515161
Target:  5'- --aCCCCACCCCgcaucaauccagccgCGCCCGAGUcaacaGGGg -3'
miRNA:   3'- gugGGGGUGGGG---------------GUGGGCUCGag---CUC- -5'
6505 3' -63.8 NC_001847.1 + 28986 0.66 0.539597
Target:  5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3'
miRNA:   3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 30005 0.68 0.431136
Target:  5'- aGCCgCCGCUgCCCGCCCGcguGCUgGGGc -3'
miRNA:   3'- gUGGgGGUGG-GGGUGGGCu--CGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 30215 0.66 0.549101
Target:  5'- gCGCCgaagCCGCgCgCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGg---GGUGgGgGUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 30319 0.66 0.511441
Target:  5'- gACgCCCGCCCCC-CCggcggCGGGCUgGAc -3'
miRNA:   3'- gUGgGGGUGGGGGuGG-----GCUCGAgCUc -5'
6505 3' -63.8 NC_001847.1 + 30971 0.66 0.549101
Target:  5'- uGCCCCCuaguaCCCCugUgGAGCagCGAa -3'
miRNA:   3'- gUGGGGGug---GGGGugGgCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 31907 0.69 0.381883
Target:  5'- cCGCCgCCGCCgCCCGCCCGccccgggccccGGuCUCGGu -3'
miRNA:   3'- -GUGGgGGUGG-GGGUGGGC-----------UC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 31976 0.66 0.539597
Target:  5'- gGCCCCguggaCGCCgCC-CUCGAGCcgCGAGg -3'
miRNA:   3'- gUGGGG-----GUGGgGGuGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 32068 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 32181 0.77 0.116876
Target:  5'- aACCCCgGCCCCCcgGCCgGGGCcCGAGg -3'
miRNA:   3'- gUGGGGgUGGGGG--UGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 32291 0.69 0.381883
Target:  5'- cCGCCCCCccccaaaaACaCCCC-CCCGGGgUCGcAGg -3'
miRNA:   3'- -GUGGGGG--------UG-GGGGuGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 32467 0.67 0.465962
Target:  5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3'
miRNA:   3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 32573 0.68 0.431136
Target:  5'- gCGCCgCCCGCCgCUGCCCcaGAGCUgGGa -3'
miRNA:   3'- -GUGG-GGGUGGgGGUGGG--CUCGAgCUc -5'
6505 3' -63.8 NC_001847.1 + 33025 0.68 0.448361
Target:  5'- uGCCgCCGCCCUCucCgCCGAGCUgGAc -3'
miRNA:   3'- gUGGgGGUGGGGGu-G-GGCUCGAgCUc -5'
6505 3' -63.8 NC_001847.1 + 33979 0.69 0.36632
Target:  5'- gCGCCCCgACCCCgGCCCcGGCccCGGc -3'
miRNA:   3'- -GUGGGGgUGGGGgUGGGcUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 34222 0.66 0.558657
Target:  5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3'
miRNA:   3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.