miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 34303 0.73 0.195071
Target:  5'- gCGCUCCgGCCCuggccggagCCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGGGgUGGG---------GGUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 34398 0.67 0.465962
Target:  5'- gACCUggACCCCgGCCCcgaGAGCUCGGc -3'
miRNA:   3'- gUGGGggUGGGGgUGGG---CUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 36410 0.73 0.224662
Target:  5'- gGCCCCgGCCCCgGCCCcGGCUuCGGc -3'
miRNA:   3'- gUGGGGgUGGGGgUGGGcUCGA-GCUc -5'
6505 3' -63.8 NC_001847.1 + 37427 0.67 0.474895
Target:  5'- cCGCUUCUGCCCCCGCCgacgacggCGAGCgcagcagCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG--------GCUCGa------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 38817 0.66 0.549101
Target:  5'- aGCCCgCCGCCCaCCGacaCCGAGCg---- -3'
miRNA:   3'- gUGGG-GGUGGG-GGUg--GGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 40087 0.67 0.483913
Target:  5'- gCACCCCUugCCgCGCCgGuGcCUCGGu -3'
miRNA:   3'- -GUGGGGGugGGgGUGGgCuC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 40237 0.71 0.282363
Target:  5'- cCACCCCCAgCCCCggcugGCCCGuGGCggugCGGu -3'
miRNA:   3'- -GUGGGGGUgGGGG-----UGGGC-UCGa---GCUc -5'
6505 3' -63.8 NC_001847.1 + 40916 0.68 0.397882
Target:  5'- gGCCCgCGCgggcgCCCCGCCgCGAGCUCc-- -3'
miRNA:   3'- gUGGGgGUG-----GGGGUGG-GCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 41923 0.69 0.36632
Target:  5'- aACCCUCGCCCUCGCCCucGCcgUCGcAGu -3'
miRNA:   3'- gUGGGGGUGGGGGUGGGcuCG--AGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 42177 0.72 0.235342
Target:  5'- aCGCCgCCCGCCC--GCCCGAGCcgugugcgaucgUCGAGg -3'
miRNA:   3'- -GUGG-GGGUGGGggUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 44391 0.7 0.336526
Target:  5'- gCGCUCCCGCUCCCgggGCCCGGccacGCgccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGG---UGGGCU----CGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 45577 0.66 0.539597
Target:  5'- gCGCUCCaCGCCCUCGCC-GGGCgCGAc -3'
miRNA:   3'- -GUGGGG-GUGGGGGUGGgCUCGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 46737 0.67 0.481199
Target:  5'- gGCCCCCugguacccgacggcGCgCCCGCCCGccGCgCGGGg -3'
miRNA:   3'- gUGGGGG--------------UGgGGGUGGGCu-CGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 46886 0.69 0.381883
Target:  5'- -cCCCCCGUCCCCGCCCGGcGCcCGc- -3'
miRNA:   3'- guGGGGGUGGGGGUGGGCU-CGaGCuc -5'
6505 3' -63.8 NC_001847.1 + 47369 0.66 0.539597
Target:  5'- uGCCCCC-CCggcggCCCGa-CGAGCUCGAc -3'
miRNA:   3'- gUGGGGGuGG-----GGGUggGCUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 50008 0.68 0.414303
Target:  5'- gCGCgCCCACCgCCugCUGGGCccCGGGc -3'
miRNA:   3'- -GUGgGGGUGGgGGugGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 50674 0.76 0.122839
Target:  5'- aCACCCCCGCCCCCcCCCccGCUCc-- -3'
miRNA:   3'- -GUGGGGGUGGGGGuGGGcuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 51197 0.7 0.329359
Target:  5'- cCGCCCCCGgCCCCGCgCGcacUUCGAGc -3'
miRNA:   3'- -GUGGGGGUgGGGGUGgGCuc-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 51965 0.65 0.567297
Target:  5'- -cCCCCCGCCgUCCGCCagcccguCGGGCgUUGGGa -3'
miRNA:   3'- guGGGGGUGG-GGGUGG-------GCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 53896 0.66 0.520762
Target:  5'- gGCCCCCcguccucgcgacGgCCCCGCCCGgaGGCgacggCGAc -3'
miRNA:   3'- gUGGGGG------------UgGGGGUGGGC--UCGa----GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.