miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 55552 0.81 0.060439
Target:  5'- aCGCCCCCggcGCCCCCGCCCGAagagGCcgCGAGc -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGCU----CGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 55884 0.66 0.549101
Target:  5'- uCGCCCgCGgCCCgACgCCGgcuagcAGCUCGGGg -3'
miRNA:   3'- -GUGGGgGUgGGGgUG-GGC------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 57689 0.68 0.414303
Target:  5'- gGCgCCCGCCCCaGCCCGccgacuGCUCGu- -3'
miRNA:   3'- gUGgGGGUGGGGgUGGGCu-----CGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 58384 0.71 0.301825
Target:  5'- cCGCCUuuGcgugcCCCCCGCCCGAGCgccCGAc -3'
miRNA:   3'- -GUGGGggU-----GGGGGUGGGCUCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 58754 0.71 0.282363
Target:  5'- gGCCCCCggcGCCCCC-CCCGAGgC-CGuGa -3'
miRNA:   3'- gUGGGGG---UGGGGGuGGGCUC-GaGCuC- -5'
6505 3' -63.8 NC_001847.1 + 60008 0.69 0.389829
Target:  5'- gCACCgCCGgCCCCggcgggGCCCGGGCcuucUCGGGc -3'
miRNA:   3'- -GUGGgGGUgGGGG------UGGGCUCG----AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 60133 0.66 0.558657
Target:  5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3'
miRNA:   3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 61386 0.73 0.214397
Target:  5'- gGCCCgCGCCgCCGCCCGGcGCUUGGa -3'
miRNA:   3'- gUGGGgGUGGgGGUGGGCU-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 63657 0.68 0.439701
Target:  5'- gCACCgCCGCCaCCgUugCCGGGCUCa-- -3'
miRNA:   3'- -GUGGgGGUGG-GG-GugGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 63726 0.71 0.301825
Target:  5'- gCACCCUC-CCCCCGgCCGAGCa---- -3'
miRNA:   3'- -GUGGGGGuGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 64449 0.81 0.057406
Target:  5'- gCGCCCCCGCCgCCGCCCGcGGCggcgCGGGg -3'
miRNA:   3'- -GUGGGGGUGGgGGUGGGC-UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66189 0.67 0.490274
Target:  5'- cCGCCCCCucuuccgcaucggcGCCgCCCAgCgGcGGCUCGGGc -3'
miRNA:   3'- -GUGGGGG--------------UGG-GGGUgGgC-UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 66295 0.71 0.2761
Target:  5'- aCGCCgCCGCgCUCgCGCCCGAGCUCu-- -3'
miRNA:   3'- -GUGGgGGUG-GGG-GUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 66687 0.66 0.549101
Target:  5'- aACCCUCGCCUCCACagCGGGCg---- -3'
miRNA:   3'- gUGGGGGUGGGGGUGg-GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 67170 0.67 0.463299
Target:  5'- gGCCCCCcgcucucggcggcgACCCCCugCCGcGGCUg--- -3'
miRNA:   3'- gUGGGGG--------------UGGGGGugGGC-UCGAgcuc -5'
6505 3' -63.8 NC_001847.1 + 68817 0.72 0.243069
Target:  5'- cCGCgCCCCACCCgCCGCagggcgccgcgaaGAGCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUGGG-GGUGgg-----------CUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 70028 0.7 0.329359
Target:  5'- gAgCCCCACCgCCAgCCGAGCcgCGGc -3'
miRNA:   3'- gUgGGGGUGGgGGUgGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 70684 0.67 0.493012
Target:  5'- gGCCCCC-CgCgCCGCCgCGGGCggcggCGGGg -3'
miRNA:   3'- gUGGGGGuGgG-GGUGG-GCUCGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 73894 0.67 0.483913
Target:  5'- gCGCCCCgCGCagcgauggCCCAgCCCGAagcGUUCGAGg -3'
miRNA:   3'- -GUGGGG-GUGg-------GGGU-GGGCU---CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 75605 0.71 0.295225
Target:  5'- cCGCCCCCACCgCCUGCCaUGAGCgcagCGc- -3'
miRNA:   3'- -GUGGGGGUGG-GGGUGG-GCUCGa---GCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.