miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 122836 0.67 0.493012
Target:  5'- gCGCCCaCCggGCCCgCGCCCuGGCUUGuGg -3'
miRNA:   3'- -GUGGG-GG--UGGGgGUGGGcUCGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 122664 0.69 0.358703
Target:  5'- cCGCCCCCGCCgCCACgCGGGaagccgCGGa -3'
miRNA:   3'- -GUGGGGGUGGgGGUGgGCUCga----GCUc -5'
6505 3' -63.8 NC_001847.1 + 122193 0.67 0.493012
Target:  5'- cCACCCCCgGCCCgCCGCCCcaccGCaCGAc -3'
miRNA:   3'- -GUGGGGG-UGGG-GGUGGGcu--CGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 122154 0.68 0.431136
Target:  5'- -cCCCCCACCCCCAgCCGGuacuGCa---- -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCU----CGagcuc -5'
6505 3' -63.8 NC_001847.1 + 121131 0.66 0.539597
Target:  5'- gCGCCgCCGCCUgCugCCGuGCUCu-- -3'
miRNA:   3'- -GUGGgGGUGGGgGugGGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 121018 0.67 0.493012
Target:  5'- gGgCCCCGCCCaUCGCCCGuGa-CGAGg -3'
miRNA:   3'- gUgGGGGUGGG-GGUGGGCuCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 120818 0.75 0.145996
Target:  5'- cCACgCCCGgCCCCACCgCGAGCagCGGGa -3'
miRNA:   3'- -GUGgGGGUgGGGGUGG-GCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 120811 0.67 0.50219
Target:  5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 120066 0.7 0.336526
Target:  5'- cUAgCCCCGgCUCCugCCGAGCcgcgCGGGg -3'
miRNA:   3'- -GUgGGGGUgGGGGugGGCUCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 119813 0.67 0.465962
Target:  5'- gCACCCCCcgcccGCCCCCgcuacGCCCGcGGCcccCGAc -3'
miRNA:   3'- -GUGGGGG-----UGGGGG-----UGGGC-UCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 119492 0.69 0.358703
Target:  5'- aGCCCgaGCCCgaGCCCGAGCcCGAGc -3'
miRNA:   3'- gUGGGggUGGGggUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 118087 0.7 0.315365
Target:  5'- gGCCgUUUACCgCCCGCCCGAGCugcgcguguacuUCGAGg -3'
miRNA:   3'- gUGG-GGGUGG-GGGUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 117261 0.76 0.122839
Target:  5'- cCGCCgCCCG-CCCCGCCCGAGgaCGGGc -3'
miRNA:   3'- -GUGG-GGGUgGGGGUGGGCUCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 117138 0.67 0.457116
Target:  5'- -cCCCCCACgCCCAacagcCCCGAcGCUacgccaGAGg -3'
miRNA:   3'- guGGGGGUGgGGGU-----GGGCU-CGAg-----CUC- -5'
6505 3' -63.8 NC_001847.1 + 116486 0.66 0.511441
Target:  5'- gUACCUgCACUCCCGCCgGAucGCUCa-- -3'
miRNA:   3'- -GUGGGgGUGGGGGUGGgCU--CGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 116417 0.71 0.288737
Target:  5'- gGCCCCgGgCCgCgCGCuuGGGCUCGAGg -3'
miRNA:   3'- gUGGGGgUgGG-G-GUGggCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 115963 0.7 0.329359
Target:  5'- --aCCCCGCCCCCGCC-GuGCUgcgCGGGg -3'
miRNA:   3'- gugGGGGUGGGGGUGGgCuCGA---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 115525 0.75 0.145996
Target:  5'- gACgCCgGCgCCCCggGCCCGAGCUCGGGc -3'
miRNA:   3'- gUGgGGgUG-GGGG--UGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 114637 0.66 0.530149
Target:  5'- gGCCCCCGCCCgcgacgaCGCgCGAGC-CGu- -3'
miRNA:   3'- gUGGGGGUGGGg------GUGgGCUCGaGCuc -5'
6505 3' -63.8 NC_001847.1 + 114081 0.67 0.50219
Target:  5'- gGgCCCCGCCCCaggGCCUcaGGGC-CGGGg -3'
miRNA:   3'- gUgGGGGUGGGGg--UGGG--CUCGaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.