miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 112730 0.68 0.397882
Target:  5'- gGgCCCCGCCCCCGCggaCGAGCa---- -3'
miRNA:   3'- gUgGGGGUGGGGGUGg--GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 112629 0.68 0.40604
Target:  5'- gCACCCCCGCUgCCCugCCaGAGCg---- -3'
miRNA:   3'- -GUGGGGGUGG-GGGugGG-CUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 112472 0.68 0.414303
Target:  5'- uCGCCCCCAUCCCCccgaucccucGCCC--GCcCGGGg -3'
miRNA:   3'- -GUGGGGGUGGGGG----------UGGGcuCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 112402 0.66 0.549101
Target:  5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 112358 0.67 0.457116
Target:  5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 111837 0.68 0.439701
Target:  5'- uCACUCgggaCCCCACCCGAGCUCc-- -3'
miRNA:   3'- -GUGGGggugGGGGUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 111772 0.76 0.139001
Target:  5'- cCAgCCCCACCCUCAUCuCGGGCcCGGGg -3'
miRNA:   3'- -GUgGGGGUGGGGGUGG-GCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 111626 1.06 0.000846
Target:  5'- uCACCCCCACCCCCACCCGAGCUCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 110319 0.67 0.474895
Target:  5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 109779 0.69 0.351199
Target:  5'- cCGCCgCCGCCCCCugCCaucAGCUUGc- -3'
miRNA:   3'- -GUGGgGGUGGGGGugGGc--UCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 108631 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 107960 0.69 0.381883
Target:  5'- -cCCCCCACCCCCACCgCGcGUg---- -3'
miRNA:   3'- guGGGGGUGGGGGUGG-GCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 107630 0.67 0.493012
Target:  5'- -gUCCCCGCCgCCGCCgCGgcGGCggcCGAGg -3'
miRNA:   3'- guGGGGGUGGgGGUGG-GC--UCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 107490 0.74 0.190484
Target:  5'- cCACCCUauaACaCCCgACCCGAGCgCGAGu -3'
miRNA:   3'- -GUGGGGg--UG-GGGgUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 107438 0.7 0.315365
Target:  5'- aCGCCCUUGCCCCCGCCgCGuGCgcCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG-GCuCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 107403 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 107239 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6505 3' -63.8 NC_001847.1 + 107159 0.67 0.474895
Target:  5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 107091 0.68 0.40604
Target:  5'- gGCCUugaggggcgCCGCCCCCGCCUcGGCUuCGAu -3'
miRNA:   3'- gUGGG---------GGUGGGGGUGGGcUCGA-GCUc -5'
6505 3' -63.8 NC_001847.1 + 106569 0.66 0.527326
Target:  5'- aCGCCUCagccaGCCCCgGCgCCGuguccucgucgucuGGCUCGGGa -3'
miRNA:   3'- -GUGGGGg----UGGGGgUG-GGC--------------UCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.