miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 104720 0.76 0.142459
Target:  5'- gCGCCUCCGCgCCCGCCaCGAGCUUGc- -3'
miRNA:   3'- -GUGGGGGUGgGGGUGG-GCUCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 103752 0.68 0.422669
Target:  5'- aGCCCgaGCCCgCGCCCGGGgaCGAc -3'
miRNA:   3'- gUGGGggUGGGgGUGGGCUCgaGCUc -5'
6505 3' -63.8 NC_001847.1 + 103721 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 103632 0.67 0.457116
Target:  5'- -gUCCCCGCUCCCAUgCGGG-UCGAa -3'
miRNA:   3'- guGGGGGUGGGGGUGgGCUCgAGCUc -5'
6505 3' -63.8 NC_001847.1 + 103453 0.67 0.456237
Target:  5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3'
miRNA:   3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5'
6505 3' -63.8 NC_001847.1 + 103149 0.67 0.465962
Target:  5'- cCACgCCCGCgUCCCuCCCGGGCUucgcgcccCGGGg -3'
miRNA:   3'- -GUGgGGGUG-GGGGuGGGCUCGA--------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 103120 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 103058 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103016 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 102934 0.76 0.139001
Target:  5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 101473 0.68 0.431136
Target:  5'- gCGCCUCUAgCCCCGCgCGGGCcgCGGc -3'
miRNA:   3'- -GUGGGGGUgGGGGUGgGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 101330 0.71 0.301825
Target:  5'- cCGCUCCCcUCCCCucuucUCUGGGCUCGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGGu----GGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 98185 0.66 0.530149
Target:  5'- gCGCCCgCgcuggccgcaGCCCCCGCUCG-GCcagCGAGa -3'
miRNA:   3'- -GUGGGgG----------UGGGGGUGGGCuCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 98090 0.7 0.322305
Target:  5'- gCACCagCCGCCCCCAgCCCaGGCUaGAGu -3'
miRNA:   3'- -GUGGg-GGUGGGGGU-GGGcUCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 96865 0.67 0.465962
Target:  5'- cCGCCaCCUGCCgCCGCCCGcGCgugCGGa -3'
miRNA:   3'- -GUGG-GGGUGGgGGUGGGCuCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 96718 0.68 0.422669
Target:  5'- cCGCCCCUcggGCUCCCGCCCcuGCggCGAa -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGcuCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 95953 0.71 0.282363
Target:  5'- cCAUCgCCCGCUCCCaggGCCUGAGcCUCGAc -3'
miRNA:   3'- -GUGG-GGGUGGGGG---UGGGCUC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 93328 0.67 0.474895
Target:  5'- gACCCgCGCCgCCCGCCCGcGCggugCGu- -3'
miRNA:   3'- gUGGGgGUGG-GGGUGGGCuCGa---GCuc -5'
6505 3' -63.8 NC_001847.1 + 93085 0.69 0.351199
Target:  5'- gGCCCCCGCgCgCGCCCGcaaAGCggggCGGGc -3'
miRNA:   3'- gUGGGGGUGgGgGUGGGC---UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 92562 0.7 0.329359
Target:  5'- cCACCCCCGUCCUCGucCCCGucGuCUCGAGg -3'
miRNA:   3'- -GUGGGGGUGGGGGU--GGGCu-C-GAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.