miRNA display CGI


Results 41 - 60 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 55552 0.81 0.060439
Target:  5'- aCGCCCCCggcGCCCCCGCCCGAagagGCcgCGAGc -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGCU----CGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 64449 0.81 0.057406
Target:  5'- gCGCCCCCGCCgCCGCCCGcGGCggcgCGGGg -3'
miRNA:   3'- -GUGGGGGUGGgGGUGGGC-UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 19588 0.82 0.049168
Target:  5'- uCGCCCCCcUCCCCgccccgauccggGCCCGAGCUCGGGc -3'
miRNA:   3'- -GUGGGGGuGGGGG------------UGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 126157 0.85 0.032437
Target:  5'- aGCCCCCACCCCCGucugcccgccCCCGGGCcCGAGa -3'
miRNA:   3'- gUGGGGGUGGGGGU----------GGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103016 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 120818 0.75 0.145996
Target:  5'- cCACgCCCGgCCCCACCgCGAGCagCGGGa -3'
miRNA:   3'- -GUGgGGGUgGGGGUGG-GCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 81295 0.75 0.149613
Target:  5'- gCACCCCCugACCCCCGCgCCG-GCUCu-- -3'
miRNA:   3'- -GUGGGGG--UGGGGGUG-GGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 63726 0.71 0.301825
Target:  5'- gCACCCUC-CCCCCGgCCGAGCa---- -3'
miRNA:   3'- -GUGGGGGuGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 95953 0.71 0.282363
Target:  5'- cCAUCgCCCGCUCCCaggGCCUGAGcCUCGAc -3'
miRNA:   3'- -GUGG-GGGUGGGGG---UGGGCUC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 78758 0.71 0.282363
Target:  5'- gGCCgaCCuCCCCgACCCGAGCgcCGAGg -3'
miRNA:   3'- gUGGg-GGuGGGGgUGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66295 0.71 0.2761
Target:  5'- aCGCCgCCGCgCUCgCGCCCGAGCUCu-- -3'
miRNA:   3'- -GUGGgGGUG-GGG-GUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 16259 0.71 0.263908
Target:  5'- gGCCCCgGCCCCgUGCaCCGAGCgccCGGGu -3'
miRNA:   3'- gUGGGGgUGGGG-GUG-GGCUCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 103120 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 9627 0.72 0.24084
Target:  5'- gCGCCCgCCGCCgcgCCgGCCCGccGCUCGAGc -3'
miRNA:   3'- -GUGGG-GGUGG---GGgUGGGCu-CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 42177 0.72 0.235342
Target:  5'- aCGCCgCCCGCCC--GCCCGAGCcgugugcgaucgUCGAGg -3'
miRNA:   3'- -GUGG-GGGUGGGggUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103058 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 134881 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 61386 0.73 0.214397
Target:  5'- gGCCCgCGCCgCCGCCCGGcGCUUGGa -3'
miRNA:   3'- gUGGGgGUGGgGGUGGGCU-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 126661 0.73 0.204536
Target:  5'- gGgCCCCGCCCCCGgCCGAGCg---- -3'
miRNA:   3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 107403 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.