miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 134881 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103058 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 98090 0.7 0.322305
Target:  5'- gCACCagCCGCCCCCAgCCCaGGCUaGAGu -3'
miRNA:   3'- -GUGGg-GGUGGGGGU-GGGcUCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 10433 0.7 0.336526
Target:  5'- gCGCUgCCGCCCCCgcGCCCG-GCUCc-- -3'
miRNA:   3'- -GUGGgGGUGGGGG--UGGGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 44391 0.7 0.336526
Target:  5'- gCGCUCCCGCUCCCgggGCCCGGccacGCgccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGG---UGGGCU----CGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 120066 0.7 0.336526
Target:  5'- cUAgCCCCGgCUCCugCCGAGCcgcgCGGGg -3'
miRNA:   3'- -GUgGGGGUgGGGGugGGCUCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 126286 0.7 0.336526
Target:  5'- -gUUCCUAUggaagcaaCCCACCUGAGCUCGAGg -3'
miRNA:   3'- guGGGGGUGg-------GGGUGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 108631 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 109779 0.69 0.351199
Target:  5'- cCGCCgCCGCCCCCugCCaucAGCUUGc- -3'
miRNA:   3'- -GUGGgGGUGGGGGugGGc--UCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 41923 0.69 0.36632
Target:  5'- aACCCUCGCCCUCGCCCucGCcgUCGcAGu -3'
miRNA:   3'- gUGGGGGUGGGGGUGGGcuCG--AGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 101330 0.71 0.301825
Target:  5'- cCGCUCCCcUCCCCucuucUCUGGGCUCGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGGu----GGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 58384 0.71 0.301825
Target:  5'- cCGCCUuuGcgugcCCCCCGCCCGAGCgccCGAc -3'
miRNA:   3'- -GUGGGggU-----GGGGGUGGGCUCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 42177 0.72 0.235342
Target:  5'- aCGCCgCCCGCCC--GCCCGAGCcgugugcgaucgUCGAGg -3'
miRNA:   3'- -GUGG-GGGUGGGggUGGGCUCG------------AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9627 0.72 0.24084
Target:  5'- gCGCCCgCCGCCgcgCCgGCCCGccGCUCGAGc -3'
miRNA:   3'- -GUGGG-GGUGG---GGgUGGGCu-CGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103120 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 16259 0.71 0.263908
Target:  5'- gGCCCCgGCCCCgUGCaCCGAGCgccCGGGu -3'
miRNA:   3'- gUGGGGgUGGGG-GUG-GGCUCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66295 0.71 0.2761
Target:  5'- aCGCCgCCGCgCUCgCGCCCGAGCUCu-- -3'
miRNA:   3'- -GUGGgGGUG-GGG-GUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 78758 0.71 0.282363
Target:  5'- gGCCgaCCuCCCCgACCCGAGCgcCGAGg -3'
miRNA:   3'- gUGGg-GGuGGGGgUGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 95953 0.71 0.282363
Target:  5'- cCAUCgCCCGCUCCCaggGCCUGAGcCUCGAc -3'
miRNA:   3'- -GUGG-GGGUGGGGG---UGGGCUC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 63726 0.71 0.301825
Target:  5'- gCACCCUC-CCCCCGgCCGAGCa---- -3'
miRNA:   3'- -GUGGGGGuGGGGGUgGGCUCGagcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.