miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 120066 0.7 0.336526
Target:  5'- cUAgCCCCGgCUCCugCCGAGCcgcgCGGGg -3'
miRNA:   3'- -GUgGGGGUgGGGGugGGCUCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 44391 0.7 0.336526
Target:  5'- gCGCUCCCGCUCCCgggGCCCGGccacGCgccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGG---UGGGCU----CGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 16259 0.71 0.263908
Target:  5'- gGCCCCgGCCCCgUGCaCCGAGCgccCGGGu -3'
miRNA:   3'- gUGGGGgUGGGG-GUG-GGCUCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66295 0.71 0.2761
Target:  5'- aCGCCgCCGCgCUCgCGCCCGAGCUCu-- -3'
miRNA:   3'- -GUGGgGGUG-GGG-GUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 78758 0.71 0.282363
Target:  5'- gGCCgaCCuCCCCgACCCGAGCgcCGAGg -3'
miRNA:   3'- gUGGg-GGuGGGGgUGGGCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 95953 0.71 0.282363
Target:  5'- cCAUCgCCCGCUCCCaggGCCUGAGcCUCGAc -3'
miRNA:   3'- -GUGG-GGGUGGGGG---UGGGCUC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 63726 0.71 0.301825
Target:  5'- gCACCCUC-CCCCCGgCCGAGCa---- -3'
miRNA:   3'- -GUGGGGGuGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 58384 0.71 0.301825
Target:  5'- cCGCCUuuGcgugcCCCCCGCCCGAGCgccCGAc -3'
miRNA:   3'- -GUGGGggU-----GGGGGUGGGCUCGa--GCUc -5'
6505 3' -63.8 NC_001847.1 + 101330 0.71 0.301825
Target:  5'- cCGCUCCCcUCCCCucuucUCUGGGCUCGGGg -3'
miRNA:   3'- -GUGGGGGuGGGGGu----GGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 98090 0.7 0.322305
Target:  5'- gCACCagCCGCCCCCAgCCCaGGCUaGAGu -3'
miRNA:   3'- -GUGGg-GGUGGGGGU-GGGcUCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 10433 0.7 0.336526
Target:  5'- gCGCUgCCGCCCCCgcGCCCG-GCUCc-- -3'
miRNA:   3'- -GUGGgGGUGGGGG--UGGGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 55884 0.66 0.549101
Target:  5'- uCGCCCgCGgCCCgACgCCGgcuagcAGCUCGGGg -3'
miRNA:   3'- -GUGGGgGUgGGGgUG-GGC------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 125624 0.66 0.549101
Target:  5'- aCGCUagCgCGCCgCCCGCUCG-GCUCGGGu -3'
miRNA:   3'- -GUGG--GgGUGG-GGGUGGGCuCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 908 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 38817 0.66 0.549101
Target:  5'- aGCCCgCCGCCCaCCGacaCCGAGCg---- -3'
miRNA:   3'- gUGGG-GGUGGG-GGUg--GGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 34222 0.66 0.558657
Target:  5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3'
miRNA:   3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 4426 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6505 3' -63.8 NC_001847.1 + 60133 0.66 0.558657
Target:  5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3'
miRNA:   3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 127024 0.66 0.558657
Target:  5'- cCGCCCCUgggGCCCCgCGCCUGcGCUgGc- -3'
miRNA:   3'- -GUGGGGG---UGGGG-GUGGGCuCGAgCuc -5'
6505 3' -63.8 NC_001847.1 + 8813 1.06 0.000846
Target:  5'- uCACCCCCACCCCCACCCGAGCUCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGGGCUCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.