Results 21 - 40 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6505 | 3' | -63.8 | NC_001847.1 | + | 120811 | 0.67 | 0.50219 |
Target: 5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3' miRNA: 3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 16480 | 0.66 | 0.510513 |
Target: 5'- aACCCCCG-CCCUGCCUGGGUggggcacUCGGu -3' miRNA: 3'- gUGGGGGUgGGGGUGGGCUCG-------AGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 47369 | 0.66 | 0.539597 |
Target: 5'- uGCCCCC-CCggcggCCCGa-CGAGCUCGAc -3' miRNA: 3'- gUGGGGGuGG-----GGGUggGCUCGAGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 4426 | 0.66 | 0.558657 |
Target: 5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3' miRNA: 3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 96865 | 0.67 | 0.465962 |
Target: 5'- cCGCCaCCUGCCgCCGCCCGcGCgugCGGa -3' miRNA: 3'- -GUGG-GGGUGGgGGUGGGCuCGa--GCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 66189 | 0.67 | 0.490274 |
Target: 5'- cCGCCCCCucuuccgcaucggcGCCgCCCAgCgGcGGCUCGGGc -3' miRNA: 3'- -GUGGGGG--------------UGG-GGGUgGgC-UCGAGCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 21054 | 0.66 | 0.511441 |
Target: 5'- gACCCCCGgCCCUgagGCCCuGGggCGGGg -3' miRNA: 3'- gUGGGGGUgGGGG---UGGGcUCgaGCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 60133 | 0.66 | 0.558657 |
Target: 5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3' miRNA: 3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 121018 | 0.67 | 0.493012 |
Target: 5'- gGgCCCCGCCCaUCGCCCGuGa-CGAGg -3' miRNA: 3'- gUgGGGGUGGG-GGUGGGCuCgaGCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 127024 | 0.66 | 0.558657 |
Target: 5'- cCGCCCCUgggGCCCCgCGCCUGcGCUgGc- -3' miRNA: 3'- -GUGGGGG---UGGGG-GUGGGCuCGAgCuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 129002 | 0.66 | 0.511441 |
Target: 5'- uCACCgCCACCgagCCC-CCCGAugGCggCGAGg -3' miRNA: 3'- -GUGGgGGUGG---GGGuGGGCU--CGa-GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 107630 | 0.67 | 0.493012 |
Target: 5'- -gUCCCCGCCgCCGCCgCGgcGGCggcCGAGg -3' miRNA: 3'- guGGGGGUGGgGGUGG-GC--UCGa--GCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 131344 | 0.66 | 0.527326 |
Target: 5'- aCGCCCCgugccggcaCGCCgucgugcagcacauCCCGCCCGGgcuGCUCGAc -3' miRNA: 3'- -GUGGGG---------GUGG--------------GGGUGGGCU---CGAGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 28986 | 0.66 | 0.539597 |
Target: 5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3' miRNA: 3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 125624 | 0.66 | 0.549101 |
Target: 5'- aCGCUagCgCGCCgCCCGCUCG-GCUCGGGu -3' miRNA: 3'- -GUGG--GgGUGG-GGGUGGGCuCGAGCUC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 34222 | 0.66 | 0.558657 |
Target: 5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3' miRNA: 3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 67170 | 0.67 | 0.463299 |
Target: 5'- gGCCCCCcgcucucggcggcgACCCCCugCCGcGGCUg--- -3' miRNA: 3'- gUGGGGG--------------UGGGGGugGGC-UCGAgcuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 32467 | 0.67 | 0.465962 |
Target: 5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3' miRNA: 3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 93328 | 0.67 | 0.474895 |
Target: 5'- gACCCgCGCCgCCCGCCCGcGCggugCGu- -3' miRNA: 3'- gUGGGgGUGG-GGGUGGGCuCGa---GCuc -5' |
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6505 | 3' | -63.8 | NC_001847.1 | + | 87597 | 0.67 | 0.483913 |
Target: 5'- gGCuCCCCGCgCCCG-CCGuGCUgGAGu -3' miRNA: 3'- gUG-GGGGUGgGGGUgGGCuCGAgCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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