miRNA display CGI


Results 41 - 60 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 7506 0.67 0.474895
Target:  5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 21054 0.66 0.511441
Target:  5'- gACCCCCGgCCCUgagGCCCuGGggCGGGg -3'
miRNA:   3'- gUGGGGGUgGGGG---UGGGcUCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 60133 0.66 0.558657
Target:  5'- uGCCCgCuggcCCCCCGCCCGccGGCggacUGAGc -3'
miRNA:   3'- gUGGGgGu---GGGGGUGGGC--UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 37427 0.67 0.474895
Target:  5'- cCGCUUCUGCCCCCGCCgacgacggCGAGCgcagcagCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG--------GCUCGa------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 127024 0.66 0.558657
Target:  5'- cCGCCCCUgggGCCCCgCGCCUGcGCUgGc- -3'
miRNA:   3'- -GUGGGGG---UGGGG-GUGGGCuCGAgCuc -5'
6505 3' -63.8 NC_001847.1 + 9659 0.68 0.414303
Target:  5'- uCGCCCCCAUCCCCccgaucccucGCCC--GCcCGGGg -3'
miRNA:   3'- -GUGGGGGUGGGGG----------UGGGcuCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 34222 0.66 0.558657
Target:  5'- gCACCgCCGCggcuauUUCCACCCGAGCccCGAc -3'
miRNA:   3'- -GUGGgGGUG------GGGGUGGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 88217 0.68 0.422669
Target:  5'- aCACCCaaaaGCgCCUCGCCgGAGC-CGAGg -3'
miRNA:   3'- -GUGGGgg--UG-GGGGUGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 101473 0.68 0.431136
Target:  5'- gCGCCUCUAgCCCCGCgCGGGCcgCGGc -3'
miRNA:   3'- -GUGGGGGUgGGGGUGgGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 9024 0.68 0.439701
Target:  5'- uCACUCgggaCCCCACCCGAGCUCc-- -3'
miRNA:   3'- -GUGGGggugGGGGUGGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 640 0.67 0.456237
Target:  5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3'
miRNA:   3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5'
6505 3' -63.8 NC_001847.1 + 67170 0.67 0.463299
Target:  5'- gGCCCCCcgcucucggcggcgACCCCCugCCGcGGCUg--- -3'
miRNA:   3'- gUGGGGG--------------UGGGGGugGGC-UCGAgcuc -5'
6505 3' -63.8 NC_001847.1 + 32467 0.67 0.465962
Target:  5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3'
miRNA:   3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 82052 0.67 0.483913
Target:  5'- gGCCgCCGCCCCgccgaaCGCugagCCGGGCUCGGc -3'
miRNA:   3'- gUGGgGGUGGGG------GUG----GGCUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 121018 0.67 0.493012
Target:  5'- gGgCCCCGCCCaUCGCCCGuGa-CGAGg -3'
miRNA:   3'- gUgGGGGUGGG-GGUGGGCuCgaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 120811 0.67 0.50219
Target:  5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 16480 0.66 0.510513
Target:  5'- aACCCCCG-CCCUGCCUGGGUggggcacUCGGu -3'
miRNA:   3'- gUGGGGGUgGGGGUGGGCUCG-------AGCUc -5'
6505 3' -63.8 NC_001847.1 + 131344 0.66 0.527326
Target:  5'- aCGCCCCgugccggcaCGCCgucgugcagcacauCCCGCCCGGgcuGCUCGAc -3'
miRNA:   3'- -GUGGGG---------GUGG--------------GGGUGGGCU---CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 28986 0.66 0.539597
Target:  5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3'
miRNA:   3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 125624 0.66 0.549101
Target:  5'- aCGCUagCgCGCCgCCCGCUCG-GCUCGGGu -3'
miRNA:   3'- -GUGG--GgGUGG-GGGUGGGCuCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.