miRNA display CGI


Results 61 - 80 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 32467 0.67 0.465962
Target:  5'- uGCCCCCGCCCCgCcccCCCGccCUCGcGg -3'
miRNA:   3'- gUGGGGGUGGGG-Gu--GGGCucGAGCuC- -5'
6505 3' -63.8 NC_001847.1 + 9545 0.67 0.457116
Target:  5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 38817 0.66 0.549101
Target:  5'- aGCCCgCCGCCCaCCGacaCCGAGCg---- -3'
miRNA:   3'- gUGGG-GGUGGG-GGUg--GGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 55884 0.66 0.549101
Target:  5'- uCGCCCgCGgCCCgACgCCGgcuagcAGCUCGGGg -3'
miRNA:   3'- -GUGGGgGUgGGGgUG-GGC------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 114637 0.66 0.530149
Target:  5'- gGCCCCCGCCCgcgacgaCGCgCGAGC-CGu- -3'
miRNA:   3'- gUGGGGGUGGGg------GUGgGCUCGaGCuc -5'
6505 3' -63.8 NC_001847.1 + 106569 0.66 0.527326
Target:  5'- aCGCCUCagccaGCCCCgGCgCCGuguccucgucgucuGGCUCGGGa -3'
miRNA:   3'- -GUGGGGg----UGGGGgUG-GGC--------------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 11268 0.67 0.50219
Target:  5'- gGgCCCCGCCCCaggGCCUcaGGGC-CGGGg -3'
miRNA:   3'- gUgGGGGUGGGGg--UGGG--CUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 107630 0.67 0.493012
Target:  5'- -gUCCCCGCCgCCGCCgCGgcGGCggcCGAGg -3'
miRNA:   3'- guGGGGGUGGgGGUGG-GC--UCGa--GCUC- -5'
6505 3' -63.8 NC_001847.1 + 66189 0.67 0.490274
Target:  5'- cCGCCCCCucuuccgcaucggcGCCgCCCAgCgGcGGCUCGGGc -3'
miRNA:   3'- -GUGGGGG--------------UGG-GGGUgGgC-UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 4346 0.67 0.474895
Target:  5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 75649 0.7 0.322305
Target:  5'- gGCCUCggcgCACCCCCugCCG-GCUgGGGa -3'
miRNA:   3'- gUGGGG----GUGGGGGugGGCuCGAgCUC- -5'
6505 3' -63.8 NC_001847.1 + 70028 0.7 0.329359
Target:  5'- gAgCCCCACCgCCAgCCGAGCcgCGGc -3'
miRNA:   3'- gUgGGGGUGGgGGUgGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 63657 0.68 0.439701
Target:  5'- gCACCgCCGCCaCCgUugCCGGGCUCa-- -3'
miRNA:   3'- -GUGGgGGUGG-GG-GugGGCUCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 122154 0.68 0.431136
Target:  5'- -cCCCCCACCCCCAgCCGGuacuGCa---- -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCU----CGagcuc -5'
6505 3' -63.8 NC_001847.1 + 88217 0.68 0.422669
Target:  5'- aCACCCaaaaGCgCCUCGCCgGAGC-CGAGg -3'
miRNA:   3'- -GUGGGgg--UG-GGGGUGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9659 0.68 0.414303
Target:  5'- uCGCCCCCAUCCCCccgaucccucGCCC--GCcCGGGg -3'
miRNA:   3'- -GUGGGGGUGGGGG----------UGGGcuCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 9917 0.68 0.397882
Target:  5'- gGgCCCCGCCCCCGCggaCGAGCa---- -3'
miRNA:   3'- gUgGGGGUGGGGGUGg--GCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 31907 0.69 0.381883
Target:  5'- cCGCCgCCGCCgCCCGCCCGccccgggccccGGuCUCGGu -3'
miRNA:   3'- -GUGGgGGUGG-GGGUGGGC-----------UC-GAGCUc -5'
6505 3' -63.8 NC_001847.1 + 93085 0.69 0.351199
Target:  5'- gGCCCCCGCgCgCGCCCGcaaAGCggggCGGGc -3'
miRNA:   3'- gUGGGGGUGgGgGUGGGC---UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 5818 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.