miRNA display CGI


Results 81 - 100 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 9659 0.68 0.414303
Target:  5'- uCGCCCCCAUCCCCccgaucccucGCCC--GCcCGGGg -3'
miRNA:   3'- -GUGGGGGUGGGGG----------UGGGcuCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 60008 0.69 0.389829
Target:  5'- gCACCgCCGgCCCCggcgggGCCCGGGCcuucUCGGGc -3'
miRNA:   3'- -GUGGgGGUgGGGG------UGGGCUCG----AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 5147 0.69 0.381883
Target:  5'- -cCCCCCACCCCCACCgCGcGUg---- -3'
miRNA:   3'- guGGGGGUGGGGGUGG-GCuCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 93085 0.69 0.351199
Target:  5'- gGCCCCCGCgCgCGCCCGcaaAGCggggCGGGc -3'
miRNA:   3'- gUGGGGGUGgGgGUGGGC---UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 80645 0.7 0.343806
Target:  5'- -cCCCCCACCCCgGCCCcGGCg---- -3'
miRNA:   3'- guGGGGGUGGGGgUGGGcUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 92562 0.7 0.329359
Target:  5'- cCACCCCCGUCCUCGucCCCGucGuCUCGAGg -3'
miRNA:   3'- -GUGGGGGUGGGGGU--GGGCu-C-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 70028 0.7 0.329359
Target:  5'- gAgCCCCACCgCCAgCCGAGCcgCGGc -3'
miRNA:   3'- gUgGGGGUGGgGGUgGGCUCGa-GCUc -5'
6505 3' -63.8 NC_001847.1 + 9545 0.67 0.457116
Target:  5'- -cCCCCCAUCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6505 3' -63.8 NC_001847.1 + 34398 0.67 0.465962
Target:  5'- gACCUggACCCCgGCCCcgaGAGCUCGGc -3'
miRNA:   3'- gUGGGggUGGGGgUGGG---CUCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 7506 0.67 0.474895
Target:  5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5'
6505 3' -63.8 NC_001847.1 + 116417 0.71 0.288737
Target:  5'- gGCCCCgGgCCgCgCGCuuGGGCUCGAGg -3'
miRNA:   3'- gUGGGGgUgGG-G-GUGggCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 245 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 36410 0.73 0.224662
Target:  5'- gGCCCCgGCCCCgGCCCcGGCUuCGGc -3'
miRNA:   3'- gUGGGGgUGGGGgUGGGcUCGA-GCUc -5'
6505 3' -63.8 NC_001847.1 + 34303 0.73 0.195071
Target:  5'- gCGCUCCgGCCCuggccggagCCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGGGgUGGG---------GGUGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 104720 0.76 0.142459
Target:  5'- gCGCCUCCGCgCCCGCCaCGAGCUUGc- -3'
miRNA:   3'- -GUGGGGGUGgGGGUGG-GCUCGAGCuc -5'
6505 3' -63.8 NC_001847.1 + 106569 0.66 0.527326
Target:  5'- aCGCCUCagccaGCCCCgGCgCCGuguccucgucgucuGGCUCGGGa -3'
miRNA:   3'- -GUGGGGg----UGGGGgUG-GGC--------------UCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 129002 0.66 0.511441
Target:  5'- uCACCgCCACCgagCCC-CCCGAugGCggCGAGg -3'
miRNA:   3'- -GUGGgGGUGG---GGGuGGGCU--CGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 120811 0.67 0.50219
Target:  5'- gCACCCCU-UCUCUGCCCGccGCUCGAu -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCu-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 70684 0.67 0.493012
Target:  5'- gGCCCCC-CgCgCCGCCgCGGGCggcggCGGGg -3'
miRNA:   3'- gUGGGGGuGgG-GGUGG-GCUCGa----GCUC- -5'
6505 3' -63.8 NC_001847.1 + 4346 0.67 0.474895
Target:  5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.