miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6505 3' -63.8 NC_001847.1 + 103058 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 111772 0.76 0.139001
Target:  5'- cCAgCCCCACCCUCAUCuCGGGCcCGGGg -3'
miRNA:   3'- -GUgGGGGUGGGGGUGG-GCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 102934 0.76 0.139001
Target:  5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 120818 0.75 0.145996
Target:  5'- cCACgCCCGgCCCCACCgCGAGCagCGGGa -3'
miRNA:   3'- -GUGgGGGUgGGGGUGG-GCUCGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 81295 0.75 0.149613
Target:  5'- gCACCCCCugACCCCCGCgCCG-GCUCu-- -3'
miRNA:   3'- -GUGGGGG--UGGGGGUG-GGCuCGAGcuc -5'
6505 3' -63.8 NC_001847.1 + 107403 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 126661 0.73 0.204536
Target:  5'- gGgCCCCGCCCCCGgCCGAGCg---- -3'
miRNA:   3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5'
6505 3' -63.8 NC_001847.1 + 61386 0.73 0.214397
Target:  5'- gGCCCgCGCCgCCGCCCGGcGCUUGGa -3'
miRNA:   3'- gUGGGgGUGGgGGUGGGCU-CGAGCUc -5'
6505 3' -63.8 NC_001847.1 + 134881 0.72 0.22995
Target:  5'- gGCCCCCgggcucggGCCCCUggGCgCCGGGCgUCGGGg -3'
miRNA:   3'- gUGGGGG--------UGGGGG--UG-GGCUCG-AGCUC- -5'
6505 3' -63.8 NC_001847.1 + 889 0.76 0.139001
Target:  5'- cCACCCCCgagAUCCUCA-UCGAGCUCGAGg -3'
miRNA:   3'- -GUGGGGG---UGGGGGUgGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 134726 0.76 0.125925
Target:  5'- cCGCCCCCGCCCgC-CCCGGGCccUCGGu -3'
miRNA:   3'- -GUGGGGGUGGGgGuGGGCUCG--AGCUc -5'
6505 3' -63.8 NC_001847.1 + 134994 0.77 0.116876
Target:  5'- aACCCCgGCCCCCcgGCCgGGGCcCGAGg -3'
miRNA:   3'- gUGGGGgUGGGGG--UGGgCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 103016 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 126157 0.85 0.032437
Target:  5'- aGCCCCCACCCCCGucugcccgccCCCGGGCcCGAGa -3'
miRNA:   3'- gUGGGGGUGGGGGU----------GGGCUCGaGCUC- -5'
6505 3' -63.8 NC_001847.1 + 19588 0.82 0.049168
Target:  5'- uCGCCCCCcUCCCCgccccgauccggGCCCGAGCUCGGGc -3'
miRNA:   3'- -GUGGGGGuGGGGG------------UGGGCUCGAGCUC- -5'
6505 3' -63.8 NC_001847.1 + 64449 0.81 0.057406
Target:  5'- gCGCCCCCGCCgCCGCCCGcGGCggcgCGGGg -3'
miRNA:   3'- -GUGGGGGUGGgGGUGGGC-UCGa---GCUC- -5'
6505 3' -63.8 NC_001847.1 + 55552 0.81 0.060439
Target:  5'- aCGCCCCCggcGCCCCCGCCCGAagagGCcgCGAGc -3'
miRNA:   3'- -GUGGGGG---UGGGGGUGGGCU----CGa-GCUC- -5'
6505 3' -63.8 NC_001847.1 + 126535 0.79 0.076109
Target:  5'- -cCCCCCGCCCCCGgCCGAGCgccgccccuggCGGGg -3'
miRNA:   3'- guGGGGGUGGGGGUgGGCUCGa----------GCUC- -5'
6505 3' -63.8 NC_001847.1 + 80611 0.79 0.082149
Target:  5'- cCGCCCCCGCCCCCGCCgCGGuuGC-CGAu -3'
miRNA:   3'- -GUGGGGGUGGGGGUGG-GCU--CGaGCUc -5'
6505 3' -63.8 NC_001847.1 + 15633 0.78 0.090918
Target:  5'- gGCCgCCGCCCCUccggGCUCGGGCUCGGGc -3'
miRNA:   3'- gUGGgGGUGGGGG----UGGGCUCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.