miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6506 5' -53.1 NC_001847.1 + 1415 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5'
6506 5' -53.1 NC_001847.1 + 58998 0.66 0.956251
Target:  5'- -aCGGCGGAGGCGAGcuuggaaaGAGCGUg-- -3'
miRNA:   3'- ggGCCGUUUCCGUUCca------UUCGCGuag -5'
6506 5' -53.1 NC_001847.1 + 31996 0.66 0.956251
Target:  5'- gCCCGGgAGGGacGCGGGcGUgGAGCGCGa- -3'
miRNA:   3'- -GGGCCgUUUC--CGUUC-CA-UUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 104228 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5'
6506 5' -53.1 NC_001847.1 + 107693 0.66 0.956251
Target:  5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3'
miRNA:   3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5'
6506 5' -53.1 NC_001847.1 + 12941 0.66 0.956251
Target:  5'- aCCCGGCcccGGCuAGuGUGgcGGCGCGc- -3'
miRNA:   3'- -GGGCCGuuuCCGuUC-CAU--UCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 102566 0.66 0.956251
Target:  5'- uCCCaGCucuGGGGCAGcggcGGgcGGCGcCAUCc -3'
miRNA:   3'- -GGGcCGu--UUCCGUU----CCauUCGC-GUAG- -5'
6506 5' -53.1 NC_001847.1 + 105855 0.66 0.955856
Target:  5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 3042 0.66 0.955856
Target:  5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 124909 0.66 0.952187
Target:  5'- gCCCGGCAGgcgcgccggGGGCGAcagcGGGCGCGc- -3'
miRNA:   3'- -GGGCCGUU---------UCCGUUcca-UUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 56894 0.66 0.952187
Target:  5'- gCCGGCGAcGGCGAcgccGGcGGGCGgGUg -3'
miRNA:   3'- gGGCCGUUuCCGUU----CCaUUCGCgUAg -5'
6506 5' -53.1 NC_001847.1 + 28035 0.66 0.952187
Target:  5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3'
miRNA:   3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5'
6506 5' -53.1 NC_001847.1 + 130210 0.66 0.952187
Target:  5'- -gCGGCGcggAGGGCGcGGgAAGCGCGg- -3'
miRNA:   3'- ggGCCGU---UUCCGUuCCaUUCGCGUag -5'
6506 5' -53.1 NC_001847.1 + 126619 0.66 0.952187
Target:  5'- gCCgGGaCAGAGGCGGGcGUcgAAGUGCccuUCu -3'
miRNA:   3'- -GGgCC-GUUUCCGUUC-CA--UUCGCGu--AG- -5'
6506 5' -53.1 NC_001847.1 + 74378 0.66 0.952187
Target:  5'- gCgCGGUAGAGGCGcuGGGggaccGCGCGg- -3'
miRNA:   3'- -GgGCCGUUUCCGU--UCCauu--CGCGUag -5'
6506 5' -53.1 NC_001847.1 + 79304 0.66 0.952187
Target:  5'- gCCGGCu--GGCAGcu---GCGCGUCa -3'
miRNA:   3'- gGGCCGuuuCCGUUccauuCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 130848 0.66 0.952187
Target:  5'- gCCGccaucgaaGCcGAGGCGGGGgcGGCGCcccUCa -3'
miRNA:   3'- gGGC--------CGuUUCCGUUCCauUCGCGu--AG- -5'
6506 5' -53.1 NC_001847.1 + 59574 0.66 0.952187
Target:  5'- gCCGGCGGAagcucuGGCu-GGcguGCGCGUCc -3'
miRNA:   3'- gGGCCGUUU------CCGuuCCauuCGCGUAG- -5'
6506 5' -53.1 NC_001847.1 + 95300 0.66 0.952187
Target:  5'- aCCGGCGGcuGGCGcgcgccacgcAGG-AAGCGC-UCg -3'
miRNA:   3'- gGGCCGUUu-CCGU----------UCCaUUCGCGuAG- -5'
6506 5' -53.1 NC_001847.1 + 32651 0.66 0.952187
Target:  5'- gCUGGa--GGGCGAGGUGgacGGCGCc-- -3'
miRNA:   3'- gGGCCguuUCCGUUCCAU---UCGCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.