Results 41 - 60 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 32682 | 0.68 | 0.270299 |
Target: 5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3' miRNA: 3'- -GGCccCCGCCccCCUCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 52707 | 0.68 | 0.270299 |
Target: 5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3' miRNA: 3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 122215 | 0.68 | 0.270299 |
Target: 5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3' miRNA: 3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134842 | 0.68 | 0.270299 |
Target: 5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3' miRNA: 3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 131029 | 0.68 | 0.264416 |
Target: 5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3' miRNA: 3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 119106 | 0.68 | 0.241922 |
Target: 5'- gCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3' miRNA: 3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 88337 | 0.68 | 0.236553 |
Target: 5'- -aGGGGGgagaagaagaCGGGGGGAacgaGGGGCGCgCg- -3' miRNA: 3'- ggCCCCC----------GCCCCCCU----CCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 19192 | 0.68 | 0.236022 |
Target: 5'- gCGGGGGCGGGGucuguGGcccagacGGcGAGUGCCgCUGc -3' miRNA: 3'- gGCCCCCGCCCC-----CC-------UC-CUCGCGG-GAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 121363 | 0.68 | 0.236553 |
Target: 5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3' miRNA: 3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 99778 | 0.68 | 0.241922 |
Target: 5'- gCGGcuuuGGGCGGGGGGc--AGCGCCUg- -3' miRNA: 3'- gGCC----CCCGCCCCCCuccUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 35176 | 0.68 | 0.247391 |
Target: 5'- gCCGGGGGCacgcGGccuucgaGGAGGAGCGCgCg- -3' miRNA: 3'- -GGCCCCCGc---CCc------CCUCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54556 | 0.68 | 0.258638 |
Target: 5'- gCGGGGGCGGcGcGGAGGAcGacgGCCCc- -3' miRNA: 3'- gGCCCCCGCCcC-CCUCCU-Cg--CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 100871 | 0.68 | 0.264416 |
Target: 5'- gCCGGGGGuCGGcGGcAGGGGCGCggCCg- -3' miRNA: 3'- -GGCCCCC-GCCcCCcUCCUCGCG--GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 43231 | 0.68 | 0.236553 |
Target: 5'- cCCGGuGGCGGuGGGGGcgcgcgggcGGcgcGGCGCCCg- -3' miRNA: 3'- -GGCCcCCGCC-CCCCU---------CC---UCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 34667 | 0.69 | 0.20641 |
Target: 5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3' miRNA: 3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 12999 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3' miRNA: 3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 59554 | 0.69 | 0.211193 |
Target: 5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3' miRNA: 3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84233 | 0.69 | 0.21607 |
Target: 5'- gCCGGGGccgcCGcGGGGGAGGAGgGCg--- -3' miRNA: 3'- -GGCCCCc---GC-CCCCCUCCUCgCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 129328 | 0.69 | 0.231284 |
Target: 5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3' miRNA: 3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 128904 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3' miRNA: 3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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