miRNA display CGI


Results 61 - 80 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 26515 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 77457 0.69 0.221044
Target:  5'- gUCGGcGGGCuGGGGcGGGcgccGGGCGCCCg- -3'
miRNA:   3'- -GGCC-CCCGcCCCC-CUC----CUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 125360 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 129328 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 95160 0.69 0.21071
Target:  5'- gCCGGcauGGCGGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCc--CCGCCCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 22547 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 29918 0.69 0.21607
Target:  5'- gCgGGGGGCcccucGGGGGAGGAGa-CUCUGg -3'
miRNA:   3'- -GgCCCCCGc----CCCCCUCCUCgcGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 128904 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 59554 0.69 0.211193
Target:  5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3'
miRNA:   3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 12999 0.69 0.211193
Target:  5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3'
miRNA:   3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 34667 0.69 0.20641
Target:  5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3'
miRNA:   3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 115554 0.69 0.201722
Target:  5'- cCCGgaucGGGGCGGGGaGGGGGGCGaaacuCCUUAa -3'
miRNA:   3'- -GGC----CCCCGCCCCcCUCCUCGC-----GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 64467 0.69 0.221044
Target:  5'- gCGGcGGcGCGGGGGGccgaagcaGGGAGCacagagacGCCCg- -3'
miRNA:   3'- gGCC-CC-CGCCCCCC--------UCCUCG--------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 76792 0.69 0.214597
Target:  5'- gCUGGGacaauaaacgcaaaGGCGGGGGGAGGgccacagagaccGGUGCCg-- -3'
miRNA:   3'- -GGCCC--------------CCGCCCCCCUCC------------UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 95193 0.69 0.215578
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 102848 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 114053 0.7 0.175498
Target:  5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3'
miRNA:   3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 135035 0.7 0.179648
Target:  5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3'
miRNA:   3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5'
6507 3' -68.6 NC_001847.1 + 130727 0.7 0.192622
Target:  5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3'
miRNA:   3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 54452 0.7 0.179648
Target:  5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3'
miRNA:   3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.