Results 41 - 60 of 132 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 111794 | 0.72 | 0.138497 |
Target: 5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3' miRNA: 3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 114930 | 0.72 | 0.141849 |
Target: 5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3' miRNA: 3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 84538 | 0.71 | 0.156008 |
Target: 5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3' miRNA: 3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 25909 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGgGUgguggCCg- -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCgCG-----GGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 128722 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 32954 | 0.71 | 0.148775 |
Target: 5'- -gGGGGGCGGaggaggccGGGGAGGccagaGGCGCCg-- -3' miRNA: 3'- ggCCCCCGCC--------CCCCUCC-----UCGCGGgau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 88257 | 0.71 | 0.156008 |
Target: 5'- gCGGggcgccGGGCGGGgacGGGGGGAGCGCuucgCCUGc -3' miRNA: 3'- gGCC------CCCGCCC---CCCUCCUCGCG----GGAU- -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 54452 | 0.7 | 0.179648 |
Target: 5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3' miRNA: 3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 57660 | 0.7 | 0.175498 |
Target: 5'- cUCGGGccGGCGGGccGGGccGGGCGCCCg- -3' miRNA: 3'- -GGCCC--CCGCCC--CCCucCUCGCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 114053 | 0.7 | 0.175498 |
Target: 5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3' miRNA: 3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 53834 | 0.7 | 0.194413 |
Target: 5'- gCGGGGGCGcugaagagccggcgcGGGGGucaGGGGGUGCUgUGg -3' miRNA: 3'- gGCCCCCGC---------------CCCCC---UCCUCGCGGgAU- -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 32222 | 0.7 | 0.179648 |
Target: 5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3' miRNA: 3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 11240 | 0.7 | 0.175498 |
Target: 5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3' miRNA: 3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 35 | 0.7 | 0.177147 |
Target: 5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3' miRNA: 3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 130727 | 0.7 | 0.192622 |
Target: 5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3' miRNA: 3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 135035 | 0.7 | 0.179648 |
Target: 5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3' miRNA: 3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 102848 | 0.7 | 0.177147 |
Target: 5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3' miRNA: 3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 128904 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3' miRNA: 3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 22547 | 0.69 | 0.221044 |
Target: 5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3' miRNA: 3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5' |
|||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 84233 | 0.69 | 0.21607 |
Target: 5'- gCCGGGGccgcCGcGGGGGAGGAGgGCg--- -3' miRNA: 3'- -GGCCCCc---GC-CCCCCUCCUCgCGggau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home