miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 35176 0.68 0.247391
Target:  5'- gCCGGGGGCacgcGGccuucgaGGAGGAGCGCgCg- -3'
miRNA:   3'- -GGCCCCCGc---CCc------CCUCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 32682 0.68 0.270299
Target:  5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3'
miRNA:   3'- -GGCccCCGCCccCCUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 121363 0.68 0.236553
Target:  5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3'
miRNA:   3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5'
6507 3' -68.6 NC_001847.1 + 19192 0.68 0.236022
Target:  5'- gCGGGGGCGGGGucuguGGcccagacGGcGAGUGCCgCUGc -3'
miRNA:   3'- gGCCCCCGCCCC-----CC-------UC-CUCGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 28216 0.68 0.264416
Target:  5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3'
miRNA:   3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5'
6507 3' -68.6 NC_001847.1 + 32915 0.68 0.270299
Target:  5'- gCCGGGGccGCGGacGGGAGGAG-GCCg-- -3'
miRNA:   3'- -GGCCCC--CGCCc-CCCUCCUCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 122215 0.68 0.270299
Target:  5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3'
miRNA:   3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 99778 0.68 0.241922
Target:  5'- gCGGcuuuGGGCGGGGGGc--AGCGCCUg- -3'
miRNA:   3'- gGCC----CCCGCCCCCCuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 43231 0.68 0.236553
Target:  5'- cCCGGuGGCGGuGGGGGcgcgcgggcGGcgcGGCGCCCg- -3'
miRNA:   3'- -GGCCcCCGCC-CCCCU---------CC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 134842 0.68 0.270299
Target:  5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3'
miRNA:   3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 131029 0.68 0.264416
Target:  5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3'
miRNA:   3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5'
6507 3' -68.6 NC_001847.1 + 52707 0.68 0.270299
Target:  5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3'
miRNA:   3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 32029 0.68 0.270299
Target:  5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3'
miRNA:   3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 88337 0.68 0.236553
Target:  5'- -aGGGGGgagaagaagaCGGGGGGAacgaGGGGCGCgCg- -3'
miRNA:   3'- ggCCCCC----------GCCCCCCU----CCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 100871 0.68 0.264416
Target:  5'- gCCGGGGGuCGGcGGcAGGGGCGCggCCg- -3'
miRNA:   3'- -GGCCCCC-GCCcCCcUCCUCGCG--GGau -5'
6507 3' -68.6 NC_001847.1 + 53614 0.67 0.282379
Target:  5'- gUGGcGGGCGGcGGGGuGGcacCGCCCg- -3'
miRNA:   3'- gGCC-CCCGCC-CCCCuCCuc-GCGGGau -5'
6507 3' -68.6 NC_001847.1 + 52977 0.67 0.307814
Target:  5'- -aGGGGGgGGGGaaGGGGGAcGCGCa--- -3'
miRNA:   3'- ggCCCCCgCCCC--CCUCCU-CGCGggau -5'
6507 3' -68.6 NC_001847.1 + 132690 0.67 0.307814
Target:  5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3'
miRNA:   3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5'
6507 3' -68.6 NC_001847.1 + 121401 0.67 0.31444
Target:  5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3'
miRNA:   3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 62489 0.67 0.275682
Target:  5'- gCCGGcGGGCGGccgcGGGGuGGcggccacAGCcGCCCUu -3'
miRNA:   3'- -GGCC-CCCGCC----CCCCuCC-------UCG-CGGGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.