Results 101 - 120 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 121401 | 0.67 | 0.31444 |
Target: 5'- aCCGGGGGCaGGagcugcguggaGGGcGGAGCcguugagcgGCCCg- -3' miRNA: 3'- -GGCCCCCGcCC-----------CCCuCCUCG---------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 106795 | 0.67 | 0.312441 |
Target: 5'- gCCGGGGGCccGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3' miRNA: 3'- -GGCCCCCG--CC--------------CCCC----UCC---UCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 132690 | 0.67 | 0.307814 |
Target: 5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3' miRNA: 3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 52977 | 0.67 | 0.307814 |
Target: 5'- -aGGGGGgGGGGaaGGGGGAcGCGCa--- -3' miRNA: 3'- ggCCCCCgCCCC--CCUCCU-CGCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 110440 | 0.67 | 0.282379 |
Target: 5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3' miRNA: 3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 16584 | 0.67 | 0.31444 |
Target: 5'- gCGGGGuCGGGGcGGcguGGGGUGCCg-- -3' miRNA: 3'- gGCCCCcGCCCC-CCu--CCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 101089 | 0.67 | 0.276286 |
Target: 5'- gCCGGGucGGCGGGGcGGGcGGGcGCGUUCg- -3' miRNA: 3'- -GGCCC--CCGCCCC-CCU-CCU-CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 7627 | 0.67 | 0.282379 |
Target: 5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3' miRNA: 3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 22109 | 0.67 | 0.282379 |
Target: 5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3' miRNA: 3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 33117 | 0.67 | 0.30389 |
Target: 5'- gCCGGGGGCcccguaccugcggcgGGuGGuGGAGugggucgaGGGCGCUCUGg -3' miRNA: 3'- -GGCCCCCG---------------CC-CC-CCUC--------CUCGCGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 22775 | 0.67 | 0.282379 |
Target: 5'- aUGGGGGCgagggaucGGGGGGAuggggauggGGGGCGaggggaaCCUGg -3' miRNA: 3'- gGCCCCCG--------CCCCCCU---------CCUCGCg------GGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 29877 | 0.67 | 0.307814 |
Target: 5'- aCGGGGaCGGGGacggcGAGGcGGCGgCCCUGc -3' miRNA: 3'- gGCCCCcGCCCCc----CUCC-UCGC-GGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54386 | 0.67 | 0.301295 |
Target: 5'- gCGGcGGGCGGccgcGGGcGAGGcgGGCGCCg-- -3' miRNA: 3'- gGCC-CCCGCC----CCC-CUCC--UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 90754 | 0.67 | 0.31444 |
Target: 5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3' miRNA: 3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 62489 | 0.67 | 0.275682 |
Target: 5'- gCCGGcGGGCGGccgcGGGGuGGcggccacAGCcGCCCUu -3' miRNA: 3'- -GGCC-CCCGCC----CCCCuCC-------UCG-CGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 124381 | 0.66 | 0.334963 |
Target: 5'- gCCGGGGaGaGGGcGGGAGaGGGgGCCg-- -3' miRNA: 3'- -GGCCCC-CgCCC-CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 115927 | 0.66 | 0.334263 |
Target: 5'- -gGGGGGCugccgucGGGaacgagcaGGGAGGGGuCGCCgCUGg -3' miRNA: 3'- ggCCCCCG-------CCC--------CCCUCCUC-GCGG-GAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 21506 | 0.66 | 0.342018 |
Target: 5'- gCCGGGcgcgccucGGCGGGGGccgcgcGGGccaacGCGCCCa- -3' miRNA: 3'- -GGCCC--------CCGCCCCCc-----UCCu----CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 108098 | 0.66 | 0.342018 |
Target: 5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3' miRNA: 3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 124720 | 0.66 | 0.323897 |
Target: 5'- gCGGGGGCggcagcgcgaaccgcGcGGGGGAGGgccgucauaaAGCgGCCCc- -3' miRNA: 3'- gGCCCCCG---------------C-CCCCCUCC----------UCG-CGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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