miRNA display CGI


Results 61 - 80 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 59554 0.69 0.211193
Target:  5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3'
miRNA:   3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 26091 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 128904 0.69 0.211193
Target:  5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3'
miRNA:   3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 12999 0.69 0.211193
Target:  5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3'
miRNA:   3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 76792 0.69 0.214597
Target:  5'- gCUGGGacaauaaacgcaaaGGCGGGGGGAGGgccacagagaccGGUGCCg-- -3'
miRNA:   3'- -GGCCC--------------CCGCCCCCCUCC------------UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 95193 0.69 0.215578
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 84233 0.69 0.21607
Target:  5'- gCCGGGGccgcCGcGGGGGAGGAGgGCg--- -3'
miRNA:   3'- -GGCCCCc---GC-CCCCCUCCUCgCGggau -5'
6507 3' -68.6 NC_001847.1 + 29918 0.69 0.21607
Target:  5'- gCgGGGGGCcccucGGGGGAGGAGa-CUCUGg -3'
miRNA:   3'- -GgCCCCCGc----CCCCCUCCUCgcGGGAU- -5'
6507 3' -68.6 NC_001847.1 + 125360 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 22547 0.69 0.221044
Target:  5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3'
miRNA:   3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 17800 0.69 0.221044
Target:  5'- aCGGGccccaGCGGGcGGGAGG-GCGCCa-- -3'
miRNA:   3'- gGCCCc----CGCCC-CCCUCCuCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 64467 0.69 0.221044
Target:  5'- gCGGcGGcGCGGGGGGccgaagcaGGGAGCacagagacGCCCg- -3'
miRNA:   3'- gGCC-CC-CGCCCCCC--------UCCUCG--------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 77457 0.69 0.221044
Target:  5'- gUCGGcGGGCuGGGGcGGGcgccGGGCGCCCg- -3'
miRNA:   3'- -GGCC-CCCGcCCCC-CUC----CUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 95091 0.69 0.225093
Target:  5'- gCUGGcGuGGCGGGGGGcgcgauuGGGGGCGCggacgagCCUGc -3'
miRNA:   3'- -GGCC-C-CCGCCCCCC-------UCCUCGCG-------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 119226 0.69 0.226115
Target:  5'- aCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3'
miRNA:   3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5'
6507 3' -68.6 NC_001847.1 + 3983 0.69 0.229723
Target:  5'- gCCGGGGGcCGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCC-GCC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 129328 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 26515 0.69 0.231284
Target:  5'- gCCGGGcGCGGGGccGGGGGCGUUCg- -3'
miRNA:   3'- -GGCCCcCGCCCCccUCCUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 19192 0.68 0.236022
Target:  5'- gCGGGGGCGGGGucuguGGcccagacGGcGAGUGCCgCUGc -3'
miRNA:   3'- gGCCCCCGCCCC-----CC-------UC-CUCGCGG-GAU- -5'
6507 3' -68.6 NC_001847.1 + 121363 0.68 0.236553
Target:  5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3'
miRNA:   3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.