Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 121363 | 0.68 | 0.236553 |
Target: 5'- gCGGcGGGCGGGGuGGGGAGCGg---- -3' miRNA: 3'- gGCC-CCCGCCCCcCUCCUCGCgggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 43231 | 0.68 | 0.236553 |
Target: 5'- cCCGGuGGCGGuGGGGGcgcgcgggcGGcgcGGCGCCCg- -3' miRNA: 3'- -GGCCcCCGCC-CCCCU---------CC---UCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 99778 | 0.68 | 0.241922 |
Target: 5'- gCGGcuuuGGGCGGGGGGc--AGCGCCUg- -3' miRNA: 3'- gGCC----CCCGCCCCCCuccUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 119106 | 0.68 | 0.241922 |
Target: 5'- gCCGcGGGGCGGcGGGGcAGGcauGGgGCCg-- -3' miRNA: 3'- -GGC-CCCCGCC-CCCC-UCC---UCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 35176 | 0.68 | 0.247391 |
Target: 5'- gCCGGGGGCacgcGGccuucgaGGAGGAGCGCgCg- -3' miRNA: 3'- -GGCCCCCGc---CCc------CCUCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54556 | 0.68 | 0.258638 |
Target: 5'- gCGGGGGCGGcGcGGAGGAcGacgGCCCc- -3' miRNA: 3'- gGCCCCCGCCcC-CCUCCU-Cg--CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 28216 | 0.68 | 0.264416 |
Target: 5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3' miRNA: 3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 131029 | 0.68 | 0.264416 |
Target: 5'- aUGGGGGCGaGGcccGGGAGGGGaGCaCCg- -3' miRNA: 3'- gGCCCCCGC-CC---CCCUCCUCgCG-GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 100871 | 0.68 | 0.264416 |
Target: 5'- gCCGGGGGuCGGcGGcAGGGGCGCggCCg- -3' miRNA: 3'- -GGCCCCC-GCCcCCcUCCUCGCG--GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32915 | 0.68 | 0.270299 |
Target: 5'- gCCGGGGccGCGGacGGGAGGAG-GCCg-- -3' miRNA: 3'- -GGCCCC--CGCCc-CCCUCCUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 134842 | 0.68 | 0.270299 |
Target: 5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3' miRNA: 3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 52707 | 0.68 | 0.270299 |
Target: 5'- gCGGGGuugcCGGgaagaccaaGGGGAGGAGCGCgCa- -3' miRNA: 3'- gGCCCCc---GCC---------CCCCUCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32682 | 0.68 | 0.270299 |
Target: 5'- uCCGccGGUGGcuGGAGGGGCGCCCg- -3' miRNA: 3'- -GGCccCCGCCccCCUCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32029 | 0.68 | 0.270299 |
Target: 5'- uCCGgcGGGGCGcGGGGAcG-GCGCCCg- -3' miRNA: 3'- -GGC--CCCCGCcCCCCUcCuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 122215 | 0.68 | 0.270299 |
Target: 5'- gCCGGGGcCGGGuGcccucAGGGGCGCCCa- -3' miRNA: 3'- -GGCCCCcGCCCcCc----UCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 62489 | 0.67 | 0.275682 |
Target: 5'- gCCGGcGGGCGGccgcGGGGuGGcggccacAGCcGCCCUu -3' miRNA: 3'- -GGCC-CCCGCC----CCCCuCC-------UCG-CGGGAu -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 101089 | 0.67 | 0.276286 |
Target: 5'- gCCGGGucGGCGGGGcGGGcGGGcGCGUUCg- -3' miRNA: 3'- -GGCCC--CCGCCCC-CCU-CCU-CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 110440 | 0.67 | 0.282379 |
Target: 5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3' miRNA: 3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 53614 | 0.67 | 0.282379 |
Target: 5'- gUGGcGGGCGGcGGGGuGGcacCGCCCg- -3' miRNA: 3'- gGCC-CCCGCC-CCCCuCCuc-GCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 124922 | 0.67 | 0.282379 |
Target: 5'- gCCGGGGGCGacaGcGGGcGCGCCCUGg -3' miRNA: 3'- -GGCCCCCGCcccCcUCCuCGCGGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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