Results 61 - 80 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 22547 | 0.69 | 0.221044 |
Target: 5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3' miRNA: 3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 77457 | 0.69 | 0.221044 |
Target: 5'- gUCGGcGGGCuGGGGcGGGcgccGGGCGCCCg- -3' miRNA: 3'- -GGCC-CCCGcCCCC-CUC----CUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 125360 | 0.69 | 0.221044 |
Target: 5'- -aGGGGGCGGGacagagaaGaGGAGGAgcgguaagcggGCGCCCc- -3' miRNA: 3'- ggCCCCCGCCC--------C-CCUCCU-----------CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 64467 | 0.69 | 0.221044 |
Target: 5'- gCGGcGGcGCGGGGGGccgaagcaGGGAGCacagagacGCCCg- -3' miRNA: 3'- gGCC-CC-CGCCCCCC--------UCCUCG--------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 29918 | 0.69 | 0.21607 |
Target: 5'- gCgGGGGGCcccucGGGGGAGGAGa-CUCUGg -3' miRNA: 3'- -GgCCCCCGc----CCCCCUCCUCgcGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84233 | 0.69 | 0.21607 |
Target: 5'- gCCGGGGccgcCGcGGGGGAGGAGgGCg--- -3' miRNA: 3'- -GGCCCCc---GC-CCCCCUCCUCgCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 95193 | 0.69 | 0.215578 |
Target: 5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCg--- -3' miRNA: 3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 76792 | 0.69 | 0.214597 |
Target: 5'- gCUGGGacaauaaacgcaaaGGCGGGGGGAGGgccacagagaccGGUGCCg-- -3' miRNA: 3'- -GGCCC--------------CCGCCCCCCUCC------------UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 128904 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3' miRNA: 3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 59554 | 0.69 | 0.211193 |
Target: 5'- gUGGGGGCGGcGGGGGcGGUGCCg-- -3' miRNA: 3'- gGCCCCCGCCcCCCUCcUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 26091 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGCGGaGGGAGcaguGGCGCUg-- -3' miRNA: 3'- -GGCCCCCGCCcCCCUCc---UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 12999 | 0.69 | 0.211193 |
Target: 5'- gCUGGGGGUGGGGGGccu-GUGCCg-- -3' miRNA: 3'- -GGCCCCCGCCCCCCuccuCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 95160 | 0.69 | 0.21071 |
Target: 5'- gCCGGcauGGCGGGGGGcgcgaucGGGGGCGCg--- -3' miRNA: 3'- -GGCCc--CCGCCCCCC-------UCCUCGCGggau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 34667 | 0.69 | 0.20641 |
Target: 5'- -aGGGGGCGGccgcgcagcGGcaGGAGGAGCGCUg-- -3' miRNA: 3'- ggCCCCCGCC---------CC--CCUCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 115554 | 0.69 | 0.201722 |
Target: 5'- cCCGgaucGGGGCGGGGaGGGGGGCGaaacuCCUUAa -3' miRNA: 3'- -GGC----CCCCGCCCCcCUCCUCGC-----GGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 53834 | 0.7 | 0.194413 |
Target: 5'- gCGGGGGCGcugaagagccggcgcGGGGGucaGGGGGUGCUgUGg -3' miRNA: 3'- gGCCCCCGC---------------CCCCC---UCCUCGCGGgAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 130727 | 0.7 | 0.192622 |
Target: 5'- -aGGGGGCGGaGGcgcGGAGGAcgcggacaGCGCCUg- -3' miRNA: 3'- ggCCCCCGCC-CC---CCUCCU--------CGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32222 | 0.7 | 0.179648 |
Target: 5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3' miRNA: 3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 135035 | 0.7 | 0.179648 |
Target: 5'- gCCGGGGcGCGGGGcgccGGAcccaGGGGCggaGCCCa- -3' miRNA: 3'- -GGCCCC-CGCCCC----CCU----CCUCG---CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54452 | 0.7 | 0.179648 |
Target: 5'- -gGGGGGCGGGGacgagcccgaGGAGGAGgGCg--- -3' miRNA: 3'- ggCCCCCGCCCC----------CCUCCUCgCGggau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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