Results 81 - 100 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6507 | 3' | -68.6 | NC_001847.1 | + | 35 | 0.7 | 0.177147 |
Target: 5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3' miRNA: 3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 102848 | 0.7 | 0.177147 |
Target: 5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3' miRNA: 3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 114053 | 0.7 | 0.175498 |
Target: 5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3' miRNA: 3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 57660 | 0.7 | 0.175498 |
Target: 5'- cUCGGGccGGCGGGccGGGccGGGCGCCCg- -3' miRNA: 3'- -GGCCC--CCGCCC--CCCucCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 11240 | 0.7 | 0.175498 |
Target: 5'- aCGGGGGggaGGGGGGAaGGGGacagucgggcccCGCCCc- -3' miRNA: 3'- gGCCCCCg--CCCCCCU-CCUC------------GCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 128722 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGguggugGCCgUGg -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCg-----CGGgAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 25909 | 0.71 | 0.159742 |
Target: 5'- gCGGGGuGCGaGGGGGAGGGGgGUgguggCCg- -3' miRNA: 3'- gGCCCC-CGC-CCCCCUCCUCgCG-----GGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 88257 | 0.71 | 0.156008 |
Target: 5'- gCGGggcgccGGGCGGGgacGGGGGGAGCGCuucgCCUGc -3' miRNA: 3'- gGCC------CCCGCCC---CCCUCCUCGCG----GGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 84538 | 0.71 | 0.156008 |
Target: 5'- uUGGcGGGCGGGGcGGGGcGuGCGCCUc- -3' miRNA: 3'- gGCC-CCCGCCCC-CCUC-CuCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 32954 | 0.71 | 0.148775 |
Target: 5'- -gGGGGGCGGaggaggccGGGGAGGccagaGGCGCCg-- -3' miRNA: 3'- ggCCCCCGCC--------CCCCUCC-----UCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 76405 | 0.72 | 0.145274 |
Target: 5'- gCCGGGGGCcgcggcGGGGGcaccccgcggcGGGAGCGCgCg- -3' miRNA: 3'- -GGCCCCCGc-----CCCCC-----------UCCUCGCGgGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 114930 | 0.72 | 0.141849 |
Target: 5'- aCGGGGGCucgcguuuGGcGGGGcGGGGCGCCg-- -3' miRNA: 3'- gGCCCCCG--------CC-CCCCuCCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 33872 | 0.72 | 0.141849 |
Target: 5'- -gGGGGGCGGGcagugaggaGGGAcgaggGGAGCGCCg-- -3' miRNA: 3'- ggCCCCCGCCC---------CCCU-----CCUCGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 8981 | 0.72 | 0.141849 |
Target: 5'- gCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3' miRNA: 3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 132731 | 0.72 | 0.139829 |
Target: 5'- gCGGGGGCcccucGGGGGAGGAcgacucugggccgagGCGCCg-- -3' miRNA: 3'- gGCCCCCGc----CCCCCUCCU---------------CGCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 111794 | 0.72 | 0.138497 |
Target: 5'- cCCGGGGGCGGGcagacGGGGGuGGGgGCUg-- -3' miRNA: 3'- -GGCCCCCGCCC-----CCCUC-CUCgCGGgau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 70697 | 0.72 | 0.135219 |
Target: 5'- gCCGcGGGCGGcGGcGGGGGCGCCCg- -3' miRNA: 3'- -GGCcCCCGCCcCCcUCCUCGCGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 54914 | 0.72 | 0.132012 |
Target: 5'- cCCGGGagcucGCGGGGGucuuGAGCGCCCUGc -3' miRNA: 3'- -GGCCCc----CGCCCCCcuc-CUCGCGGGAU- -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 10871 | 0.72 | 0.132012 |
Target: 5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3' miRNA: 3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5' |
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6507 | 3' | -68.6 | NC_001847.1 | + | 113684 | 0.72 | 0.132012 |
Target: 5'- cCCGcGGGGCGGGaGGGggaaggGGGAGCcggagcuuugGCCCg- -3' miRNA: 3'- -GGC-CCCCGCCC-CCC------UCCUCG----------CGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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