miRNA display CGI


Results 81 - 100 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6507 3' -68.6 NC_001847.1 + 88337 0.68 0.236553
Target:  5'- -aGGGGGgagaagaagaCGGGGGGAacgaGGGGCGCgCg- -3'
miRNA:   3'- ggCCCCC----------GCCCCCCU----CCUCGCGgGau -5'
6507 3' -68.6 NC_001847.1 + 90754 0.67 0.31444
Target:  5'- gCCGGGcccCGGGaGcGGGAGCGCCCUu -3'
miRNA:   3'- -GGCCCcc-GCCCcCcUCCUCGCGGGAu -5'
6507 3' -68.6 NC_001847.1 + 95091 0.69 0.225093
Target:  5'- gCUGGcGuGGCGGGGGGcgcgauuGGGGGCGCggacgagCCUGc -3'
miRNA:   3'- -GGCC-C-CCGCCCCCC-------UCCUCGCG-------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 95160 0.69 0.21071
Target:  5'- gCCGGcauGGCGGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCc--CCGCCCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 95193 0.69 0.215578
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCg--- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGggau -5'
6507 3' -68.6 NC_001847.1 + 95253 0.74 0.098415
Target:  5'- aUCGGGGGCGcgaucGGGGGcgcgaucGGGGGCGCCg-- -3'
miRNA:   3'- -GGCCCCCGC-----CCCCC-------UCCUCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 99778 0.68 0.241922
Target:  5'- gCGGcuuuGGGCGGGGGGc--AGCGCCUg- -3'
miRNA:   3'- gGCC----CCCGCCCCCCuccUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 100871 0.68 0.264416
Target:  5'- gCCGGGGGuCGGcGGcAGGGGCGCggCCg- -3'
miRNA:   3'- -GGCCCCC-GCCcCCcUCCUCGCG--GGau -5'
6507 3' -68.6 NC_001847.1 + 101089 0.67 0.276286
Target:  5'- gCCGGGucGGCGGGGcGGGcGGGcGCGUUCg- -3'
miRNA:   3'- -GGCCC--CCGCCCC-CCU-CCU-CGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 101161 0.66 0.356448
Target:  5'- gCCGGGGcCGGGgccGGGGucGGGGCGCggUCUAa -3'
miRNA:   3'- -GGCCCCcGCCC---CCCU--CCUCGCG--GGAU- -5'
6507 3' -68.6 NC_001847.1 + 102683 0.77 0.054373
Target:  5'- -gGGGGGCGGGGcGGGGGcagGGCGCCg-- -3'
miRNA:   3'- ggCCCCCGCCCC-CCUCC---UCGCGGgau -5'
6507 3' -68.6 NC_001847.1 + 102848 0.7 0.177147
Target:  5'- cCCGGGGGgguguuuuUGGGGGGGGGcggaaauuucggcgcGGCggGCCCg- -3'
miRNA:   3'- -GGCCCCC--------GCCCCCCUCC---------------UCG--CGGGau -5'
6507 3' -68.6 NC_001847.1 + 105585 0.66 0.327326
Target:  5'- gCCGGcacGGCGuccgugcGGGGGAacucGAGCGCCCg- -3'
miRNA:   3'- -GGCCc--CCGC-------CCCCCUc---CUCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 106795 0.67 0.312441
Target:  5'- gCCGGGGGCccGGgcgcgcggccccgcGGGGcgccGGGcccGGCGCCCg- -3'
miRNA:   3'- -GGCCCCCG--CC--------------CCCC----UCC---UCGCGGGau -5'
6507 3' -68.6 NC_001847.1 + 108098 0.66 0.342018
Target:  5'- cCCGGGGaCGGGGGuacGGcGAGCGCgacggcgaggguCCUGg -3'
miRNA:   3'- -GGCCCCcGCCCCCc--UC-CUCGCG------------GGAU- -5'
6507 3' -68.6 NC_001847.1 + 109653 0.73 0.11119
Target:  5'- gCGGGGaGuUGGGGGGGGGGGCggcgcuugcuuugGCCCg- -3'
miRNA:   3'- gGCCCC-C-GCCCCCCUCCUCG-------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 110237 0.79 0.044458
Target:  5'- -gGGGGGgGGGGGGGGGGGCguacuugcagcgGCCCg- -3'
miRNA:   3'- ggCCCCCgCCCCCCUCCUCG------------CGGGau -5'
6507 3' -68.6 NC_001847.1 + 110440 0.67 0.282379
Target:  5'- -gGGuGGGUGGGGGGGuGGAGgGaCCa- -3'
miRNA:   3'- ggCC-CCCGCCCCCCU-CCUCgCgGGau -5'
6507 3' -68.6 NC_001847.1 + 111288 0.75 0.07904
Target:  5'- gCCGGGGGCGGcgcucggccGGGGGcGGGGC-CCCUu -3'
miRNA:   3'- -GGCCCCCGCC---------CCCCU-CCUCGcGGGAu -5'
6507 3' -68.6 NC_001847.1 + 111432 1.06 0.00032
Target:  5'- gCCGGGGGCGGGGGGAGGAGCGCCCUAc -3'
miRNA:   3'- -GGCCCCCGCCCCCCUCCUCGCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.